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vgteam / vg Public

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Add tests for getting tags from FASTQ through chaining Giraffe and into BAM#4912

Merged

adamnovak merged 4 commits into

mastervgteam/vg:masterfrom

keep-tags-chainingvgteam/vg:keep-tags-chainingCopy head branch name to clipboard

May 22, 2026

Conversation Commits4 (4)Checks Files changed

Merged

Add tests for getting tags from FASTQ through chaining Giraffe and into BAM#4912
adamnovak merged 4 commits into
masterfrom
keep-tags-chaining

Commits

Commits on May 21, 2026

Add test showing that tags make it through from FASTQ to BAM in chaining mode
adamnovak
committed
Test tags making it through Giraffe to GAM, and through surject to BAM
adamnovak
committed
Preserve tags on unmapped reads in Giraffe and tags on input GAF records in surject
adamnovak
committed
Remove wrong flag filter
adamnovak
committed

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