Repositories list

• ensembl-LEAP

  Public
  Python

  •

  MIT License

  •00 forks in Ensembl/ensembl-LEAP•00 stars in Ensembl/ensembl-LEAP•00 issues in Ensembl/ensembl-LEAP•00 pull requests in Ensembl/ensembl-LEAP•Updated Nov 13, 2026Nov 13, 2026

• ensembl-genes

  Public
  Python Ensembl Gene Annotation code source repository

  Python

  •

  Apache License 2.0

  •44 forks in Ensembl/ensembl-genes•44 stars in Ensembl/ensembl-genes•00 issues in Ensembl/ensembl-genes•33 pull requests in Ensembl/ensembl-genes•Updated Nov 13, 2026Nov 13, 2026

• ensembl-vep-py

  Public
  Python

  •

  Apache License 2.0

  •00 forks in Ensembl/ensembl-vep-py•00 stars in Ensembl/ensembl-vep-py•00 issues in Ensembl/ensembl-vep-py•55 pull requests in Ensembl/ensembl-vep-py•Updated Nov 13, 2026Nov 13, 2026

• tark

  Public
  HTML

  •

  Apache License 2.0

  •33 forks in Ensembl/tark•44 stars in Ensembl/tark•44 issues in Ensembl/tark•33 pull requests in Ensembl/tark•Updated Nov 13, 2026Nov 13, 2026

• ensembl-genes-metadata

  Public
  TypeScript

  •

  Apache License 2.0

  •33 forks in Ensembl/ensembl-genes-metadata•11 star in Ensembl/ensembl-genes-metadata•33 issues in Ensembl/ensembl-genes-metadata•33 pull requests in Ensembl/ensembl-genes-metadata•Updated Nov 13, 2026Nov 13, 2026

• VEP_plugins

  Public
  Plugins for the Ensembl Variant Effect Predictor (VEP)

  Perl

  •

  Apache License 2.0

  •123123 forks in Ensembl/VEP_plugins•175175 stars in Ensembl/VEP_plugins•99 issues in Ensembl/VEP_plugins•1010 pull requests in Ensembl/VEP_plugins•Updated Nov 13, 2026Nov 13, 2026

• ensembl-elements

  Public
  Ensembl shared elements

  TypeScript

  •

  Apache License 2.0

  •00 forks in Ensembl/ensembl-elements•00 stars in Ensembl/ensembl-elements•00 issues in Ensembl/ensembl-elements•22 pull requests in Ensembl/ensembl-elements•Updated Nov 13, 2026Nov 13, 2026

• ensembl-genomio

  Public
  Pipelines to turn basic genomic data into Ensembl cores and back

  Python

  •

  Apache License 2.0

  •1313 forks in Ensembl/ensembl-genomio•1010 stars in Ensembl/ensembl-genomio•00 issues in Ensembl/ensembl-genomio•33 pull requests in Ensembl/ensembl-genomio•Updated Nov 13, 2026Nov 13, 2026

• ensembl-anno

  Public
  Ensembl Automatic annotation pipeline

  annotation

  annotation

  Python

  •

  Apache License 2.0

  •77 forks in Ensembl/ensembl-anno•1111 stars in Ensembl/ensembl-anno•11 issue in Ensembl/ensembl-anno•44 pull requests in Ensembl/ensembl-anno•Updated Nov 13, 2026Nov 13, 2026

• ensembl-web-tools-api

  Public
  Python

  •

  Apache License 2.0

  •11 fork in Ensembl/ensembl-web-tools-api•00 stars in Ensembl/ensembl-web-tools-api•00 issues in Ensembl/ensembl-web-tools-api•11 pull request in Ensembl/ensembl-web-tools-api•Updated Nov 13, 2026Nov 13, 2026

• ensembl-genes-nf

  Public
  Ensembl Genebuild NextFlow pipelines

  Nextflow

  •66 forks in Ensembl/ensembl-genes-nf•22 stars in Ensembl/ensembl-genes-nf•00 issues in Ensembl/ensembl-genes-nf•44 pull requests in Ensembl/ensembl-genes-nf•Updated Nov 13, 2026Nov 13, 2026

• ensembl-metadata-api

  Public
  ensembl_genome_metadata schema SQLAlchemy ORM layer

  Python

  •

  Apache License 2.0

  •22 forks in Ensembl/ensembl-metadata-api•22 stars in Ensembl/ensembl-metadata-api•00 issues in Ensembl/ensembl-metadata-api•22 pull requests in Ensembl/ensembl-metadata-api•Updated Nov 12, 2026Nov 12, 2026

• ensembl-analysis

  Public
  Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines

  Perl

  •

  Apache License 2.0

  •3636 forks in Ensembl/ensembl-analysis•1818 stars in Ensembl/ensembl-analysis•00 issues in Ensembl/ensembl-analysis•11 pull request in Ensembl/ensembl-analysis•Updated Nov 12, 2026Nov 12, 2026

• ensembl-refget

  Public
  Python

  •

  Apache License 2.0

  •00 forks in Ensembl/ensembl-refget•00 stars in Ensembl/ensembl-refget•00 issues in Ensembl/ensembl-refget•11 pull request in Ensembl/ensembl-refget•Updated Nov 12, 2026Nov 12, 2026

• ensembl-client

  Public
  The frontend of the new Ensembl website

  TypeScript

  •

  Apache License 2.0

  •44 forks in Ensembl/ensembl-client•1717 stars in Ensembl/ensembl-client•00 issues in Ensembl/ensembl-client•55 pull requests in Ensembl/ensembl-client•Updated Nov 12, 2026Nov 12, 2026

• regulation-data-registry

  Public
  PLpgSQL

  •

  Apache License 2.0

  •00 forks in Ensembl/regulation-data-registry•00 stars in Ensembl/regulation-data-registry•00 issues in Ensembl/regulation-data-registry•00 pull requests in Ensembl/regulation-data-registry•Updated Nov 12, 2026Nov 12, 2026

• ensembl-web-track-api

  Public
  A Django app for serving the available annotation tracks for Ensembl client.

  Python

  •

  Apache License 2.0

  •11 fork in Ensembl/ensembl-web-track-api•11 star in Ensembl/ensembl-web-track-api•00 issues in Ensembl/ensembl-web-track-api•33 pull requests in Ensembl/ensembl-web-track-api•Updated Nov 12, 2026Nov 12, 2026

• ensembl-mcp

  Public
  Ensembl Model Context Protocol (MCP) server pilot, supporting development and evaluation of the EMBL-EBI MCP guidelines.

  Python

  •

  Apache License 2.0

  •00 forks in Ensembl/ensembl-mcp•00 stars in Ensembl/ensembl-mcp•00 issues in Ensembl/ensembl-mcp•00 pull requests in Ensembl/ensembl-mcp•Updated Nov 12, 2026Nov 12, 2026

• nextflow_modules

  Public
  A collection of shared Ensembl modules used in NextFlow pipelines

  Nextflow

  •33 forks in Ensembl/nextflow_modules•44 stars in Ensembl/nextflow_modules•11 issue in Ensembl/nextflow_modules•33 pull requests in Ensembl/nextflow_modules•Updated Nov 11, 2026Nov 11, 2026

• ensembl-variation-pipelines

  Public
  Python

  •

  Apache License 2.0

  •55 forks in Ensembl/ensembl-variation-pipelines•00 stars in Ensembl/ensembl-variation-pipelines•00 issues in Ensembl/ensembl-variation-pipelines•1313 pull requests in Ensembl/ensembl-variation-pipelines•Updated Nov 11, 2026Nov 11, 2026

• ensembl-datacheck-py

  Public
  Python

  •

  Apache License 2.0

  •77 forks in Ensembl/ensembl-datacheck-py•22 stars in Ensembl/ensembl-datacheck-py•00 issues in Ensembl/ensembl-datacheck-py•77 pull requests in Ensembl/ensembl-datacheck-py•Updated Nov 11, 2026Nov 11, 2026

• distiller

  Public
  Python

  •

  Apache License 2.0

  •00 forks in Ensembl/distiller•00 stars in Ensembl/distiller•00 issues in Ensembl/distiller•22 pull requests in Ensembl/distiller•Updated Nov 10, 2026Nov 10, 2026

• ensembl-hypsipyle

  Public
  Ensembl Variation GraphQL server

  Python

  •

  Apache License 2.0

  •44 forks in Ensembl/ensembl-hypsipyle•00 stars in Ensembl/ensembl-hypsipyle•55 issues in Ensembl/ensembl-hypsipyle•22 pull requests in Ensembl/ensembl-hypsipyle•Updated Nov 10, 2026Nov 10, 2026

• ensembl-taxonomy

  Public
  API for accessing NCBI taxonomy

  apiperlensembl+ 1

  apiperlensemblncbi-taxonomy

  Perl

  •

  Apache License 2.0

  •33 forks in Ensembl/ensembl-taxonomy•11 star in Ensembl/ensembl-taxonomy•00 issues in Ensembl/ensembl-taxonomy•00 pull requests in Ensembl/ensembl-taxonomy•Updated Nov 10, 2026Nov 10, 2026

• ensembl-web-resolver

  Public
  Python

  •

  Apache License 2.0

  •00 forks in Ensembl/ensembl-web-resolver•00 stars in Ensembl/ensembl-web-resolver•00 issues in Ensembl/ensembl-web-resolver•00 pull requests in Ensembl/ensembl-web-resolver•Updated Nov 9, 2026Nov 9, 2026

• ensembl-web-metadata-api

  Public
  Metadata API for beta.ensembl.org

  Python

  •

  Apache License 2.0

  •11 fork in Ensembl/ensembl-web-metadata-api•00 stars in Ensembl/ensembl-web-metadata-api•11 issue in Ensembl/ensembl-web-metadata-api•22 pull requests in Ensembl/ensembl-web-metadata-api•Updated Nov 9, 2026Nov 9, 2026

• ensembl-vep

  Public
  The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

  Perl

  •

  Apache License 2.0

  •191191 forks in Ensembl/ensembl-vep•578578 stars in Ensembl/ensembl-vep•6565 issues in Ensembl/ensembl-vep•1010 pull requests in Ensembl/ensembl-vep•Updated Nov 9, 2026Nov 9, 2026

• ensembl-datacheck

  Public
  Code for checking Ensembl databases during release production

  Perl

  •

  Apache License 2.0

  •2828 forks in Ensembl/ensembl-datacheck•55 stars in Ensembl/ensembl-datacheck•00 issues in Ensembl/ensembl-datacheck•00 pull requests in Ensembl/ensembl-datacheck•Updated Nov 6, 2026Nov 6, 2026

• plant-scripts

  Public
  Scripting analyses of genomes in Ensembl Plants

  Perl

  •

  Apache License 2.0

  •1111 forks in Ensembl/plant-scripts•4545 stars in Ensembl/plant-scripts•22 issues in Ensembl/plant-scripts•11 pull request in Ensembl/plant-scripts•Updated Nov 6, 2026Nov 6, 2026

• ensembl-utils

  Public
  Ensembl python utils

  Python

  •

  Apache License 2.0

  •44 forks in Ensembl/ensembl-utils•66 stars in Ensembl/ensembl-utils•00 issues in Ensembl/ensembl-utils•00 pull requests in Ensembl/ensembl-utils•Updated Nov 5, 2026Nov 5, 2026