Added web server subcommand - #7

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sriram98v wants to merge 28 commits into

mainfrom

Commits on Mar 24, 2026

Added server subcommand with web UI
sriram98v
committed
cf00a8a

Commits on Mar 31, 2026

Added uv.lock and pyproject.toml; Added tooltips to the UI; Added option to export the tree figure with custom sizing and dpi
sriram98v
committed
70651c9
Converted regex to compiled form and fullmatch instead of match
sanketwagle
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143b890
Nitpick: conditions like !(a <= x<= b) should be x <= a or x>=b to take advantage of short-circuiting
sanketwagle
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ccaabc7
Merge pull request #8 from sanketwagle/web-server
sriram98v
authored
c8a3441

Commits on Jun 15, 2026

feat: replace phylotree.js with paper.js canvas renderer + annotation layer
sriram98v
committed
73a72e7

Commits on Jun 16, 2026

feat: improve tree layout, legend, and theme-aware export
sriram98v
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6d66de2
fix: move legend to dedicated right column with padding to avoid label overlap
sriram98v
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2bbc07c
feat: add sidebar toggle, results collapse, and tree maximize controls
sriram98v
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62543ed

Commits on Jun 18, 2026

feat: tabbed sidebar with results panel, legend to top, collapse animation
sriram98v
committed
be2f6f0
feat: collapsible sections, smooth animations, fix sidebar resize lag
sriram98v
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44b53b1
feat: remove sidebar-collapse btn, sweep-bar, maximize btn; smooth zoom via CSS scale
sriram98v
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ef2c9ef
feat: sweep sidebar tab, evaluate legend captions, evaluate export, tooltip fix, scroll fix, remove zoom buttons
sriram98v
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18005b8
perf: warm up numba JIT at server start to eliminate 13s first-query delay
sriram98v
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530f506

Commits on Jun 19, 2026

feat: merge sweep into results tab, fix scroll/legend/panning/memoization
sriram98v
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4047896
refactor: remove dead JS/CSS, implement web perf wins
sriram98v
committed
7ac184a
perf: cache leaves() via WeakMap, fix sweepCache weights key
sriram98v
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c833e6f
perf: memoize _effectiveColors, hoist cladeGroups to Map in renderer
sriram98v
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f1329cb
perf: reuse SymbolDefinition for leaf dots, reducing paper.js item count
sriram98v
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10695ad
fix: crash on redraw — SymbolDefinition has no remove() method
sriram98v
committed
2dcb862
style: compact header — h1→h2, tagline inline, reduce padding
sriram98v
committed
dbddd8b
Merge branch 'web-server' of https://github.com/flu-crew/parnas into web-server
sriram98v
committed
b98c6e1

Commits on Jun 22, 2026

Revert "style: compact header — h1→h2, tagline inline, reduce padding"
sriram98v
committed
4dd8cac
Reapply "style: compact header — h1→h2, tagline inline, reduce padding"
sriram98v
committed
5bcdfb5

Commits on Jun 25, 2026

feat: dual sweep modes with publication-quality figure
sriram98v
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423274e

Commits on Jun 26, 2026

feat: sweep/tree viewer QOL improvements
sriram98v
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48c5eaa
feat: add performance benchmark scripts and update dependencies
sriram98v
committed
46eadb6

Commits on Jul 2, 2026

docs: document parnas server subcommand; add study + supplementary data
sriram98v
committed
16c2a85