New SashimiBigWig Track v2

docs/content/all_default_properties.csv

@@ -1,76 +1,87 @@
-parameter,x_axis,epilogos,links,domains,bed,gtf,narrow_peak,bigwig,bedgraph,bedgraph_matrix,hlines,hic_matrix,hic_matrix_square,maf,scalebar,vlines,vhighlight
-overlay_previous,no,no,no,no,no,no,no,no,no,no,no,no,no,no,no,,
-where,bottom,,,,,,,,,,,,,,left,,
-fontsize,15,,,,12,12,,,,,,,,,12,,
-categories_file,,not set,,,,,,,,,,,,,,,
-orientation,,not set,not set,not set,not set,not set,not set,not set,not set,not set,not set,not set,not set,not set,,,
-links_type,,,arcs,,,,,,,,,,,,,,
-line_width,,,not set,0.5,0.5,0.5,1,,,,0.5,,,0.5,0.5,0.5,0.5
-line_style,,,solid,,,,,,,,solid,,,,,dashed,
-color,,,blue,#1f78b4,#1f78b4,#1f78b4,#FF000080,#33a02c,#a6cee3,,black,,,,black,black,yellow
-alpha,,,0.8,,,,,1,1,,1,,,,1,0.7,0.5
-max_value,,,not set,not set,not set,,not set,not set,not set,not set,not set,not set,not set,,,,
-min_value,,,not set,not set,not set,,,not set,not set,not set,not set,not set,not set,,,,
-ylim,,,not set,,,,,,,,,,,,,,
-compact_arcs_level,,,0,,,,,,,,,,,,,,
-use_middle,,,false,,,,,,false,,,,,,,,
-region2,,,not set,,,,,,,,,,not set,,,,
-border_color,,,,black,black,black,,,,,,,,,,,none
-prefered_name,,,,transcript_name,transcript_name,transcript_name,,,,,,,,,,,
-merge_transcripts,,,,false,false,false,,,,,,,,,,,
-labels,,,,,true,true,,,,,,,,,,,
-style,,,,,flybase,flybase,,,,,,,,,,,
-display,,,,,stacked,stacked,,,,,,,,,,,
-max_labels,,,,,60,60,,,,,,,,,,,
-merge_overlapping_exons,,,,,false,false,,,,,,,,,,,
-global_max_row,,,,,false,false,,,,,,,,,,,
-gene_rows,,,,,not set,not set,,,,,,,,,,,
-arrow_interval,,,,,2,2,,,,,,,,,,,
-arrowhead_included,,,,,false,false,,,,,,,,,,,
-arrowhead_fraction,,,,,0.004,0.004,,,,,,,,,,,
-color_utr,,,,,grey,grey,,,,,,,,,,,
-color_backbone,,,,,black,black,,,,,,,,,,,
-height_utr,,,,,1,1,,,,,,,,,,,
-arrow_length,,,,,not set,not set,,,,,,,,,,,
-height_intron,,,,,0.5,0.5,,,,,,,,,,,
-all_labels_inside,,,,,false,false,,,,,,,,,,,
-labels_in_margin,,,,,false,false,,,,,,,,,,,
-fontstyle,,,,,normal,normal,,,,,,,,,,,
-color_arrow,,,,,black,black,,,,,,,,,,,
-show_data_range,,,,,,,true,true,true,true,true,,,,,,
-show_labels,,,,,,,true,,,,,,,,,,
-use_summit,,,,,,,true,,,,,,,,,,
-width_adjust,,,,,,,1.5,,,,,,,,,,
-type,,,,,,,peak,fill,fill,matrix,,,,,,,
-negative_color,,,,,,,,not set,not set,,,,,,,,
-nans_to_zeros,,,,,,,,false,false,,,,,,,,
-summary_method,,,,,,,,mean,not set,,,,,,,,
-number_of_bins,,,,,,,,700,700,,,,,,,,
-transform,,,,,,,,no,no,,,no,no,,,,
-log_pseudocount,,,,,,,,0,0,,,,,,,,
-y_axis_values,,,,,,,,transformed,transformed,,,,,,,,
-second_file*,,,,,,,,not set,not set,,,,,,,,
-operation*,,,,,,,,file,file,,,,,,,,
-grid,,,,,,,,false,false,,,,,,,,
-rasterize,,,,,,,,,false,true,,true,true,false,,,
-pos_score_in_bin,,,,,,,,,,center,,,,,,,
-plot_horizontal_lines,,,,,,,,,,false,,,,,,,
-colormap,,,,,,,,,,viridis,,RdYlBu_r,RdYlBu_r,,,,
-individual_color,,,,,,,,,,grey,,,,,,,
-summary_color,,,,,,,,,,#1f77b4,,,,,,,
-depth,,,,,,,,,,,,100000,,,,,
-show_masked_bins,,,,,,,,,,,,false,false,,,,
-scale_factor,,,,,,,,,,,,1,1,,,,
-file_index,,,,,,,,,,,,,,not set,,,
-color_identical,,,,,,,,,,,,,,black,,,
-color_mismatch,,,,,,,,,,,,,,grey,,,
-color_gap,,,,,,,,,,,,,,lightgrey,,,
-species_order,,,,,,,,,,,,,,not set,,,
-species_labels,,,,,,,,,,,,,,not set,,,
-species_order_only,,,,,,,,,,,,,,false,,,
-display_ref_seq,,,,,,,,,,,,,,false,,,
-x_center,,,,,,,,,,,,,,,not set,,
-size,,,,,,,,,,,,,,,not set,,
-scalebar_start_position,,,,,,,,,,,,,,,not set,,
-scalebar_end_position,,,,,,,,,,,,,,,not set,,
-zorder,,,,,,,,,,,,,,,,10,-100
+parameter,x_axis,epilogos,links,domains,bed,gtf,narrow_peak,bigwig,bedgraph,bedgraph_matrix,hlines,hic_matrix,hic_matrix_square,maf,scalebar,sashimiBigWig,vlines,vhighlight
+overlay_previous,no,no,no,no,no,no,no,no,no,no,no,no,no,no,no,no,,
+where,bottom,,,,,,,,,,,,,,left,,,
+fontsize,15,,,,12,12,,,,,,,,,12,,,
+categories_file,,not set,,,,,,,,,,,,,,,,
+orientation,,not set,not set,not set,not set,not set,not set,not set,not set,not set,not set,not set,not set,not set,,not set,,
+links_type,,,arcs,,,,,,,,,,,,,,,
+line_width,,,not set,0.5,0.5,0.5,1,,,,0.5,,,0.5,0.5,,0.5,0.5
+line_style,,,solid,,,,,,,,solid,,,,,,dashed,
+color,,,blue,#1f78b4,#1f78b4,#1f78b4,#FF000080,#33a02c,#a6cee3,,black,,,,black,,black,yellow
+alpha,,,0.8,,,,,1,1,,1,,,,1,1,0.7,0.5
+max_value,,,not set,not set,not set,,not set,not set,not set,not set,not set,not set,not set,,,not set,,
+min_value,,,not set,not set,not set,,,not set,not set,not set,not set,not set,not set,,,not set,,
+ylim,,,not set,,,,,,,,,,,,,,,
+compact_arcs_level,,,0,,,,,,,,,,,,,,,
+use_middle,,,false,,,,,,false,,,,,,,,,
+region2,,,not set,,,,,,,,,,not set,,,,,
+border_color,,,,black,black,black,,,,,,,,,,,,none
+prefered_name,,,,transcript_name,transcript_name,transcript_name,,,,,,,,,,,,
+merge_transcripts,,,,false,false,false,,,,,,,,,,,,
+labels,,,,,true,true,,,,,,,,,,,,
+style,,,,,flybase,flybase,,,,,,,,,,,,
+display,,,,,stacked,stacked,,,,,,,,,,,,
+max_labels,,,,,60,60,,,,,,,,,,,,
+merge_overlapping_exons,,,,,false,false,,,,,,,,,,,,
+global_max_row,,,,,false,false,,,,,,,,,,,,
+gene_rows,,,,,not set,not set,,,,,,,,,,,,
+arrow_interval,,,,,2,2,,,,,,,,,,,,
+arrowhead_included,,,,,false,false,,,,,,,,,,,,
+arrowhead_fraction,,,,,0.004,0.004,,,,,,,,,,,,
+color_utr,,,,,grey,grey,,,,,,,,,,,,
+color_backbone,,,,,black,black,,,,,,,,,,,,
+height_utr,,,,,1,1,,,,,,,,,,,,
+arrow_length,,,,,not set,not set,,,,,,,,,,,,
+height_intron,,,,,0.5,0.5,,,,,,,,,,,,
+all_labels_inside,,,,,false,false,,,,,,,,,,,,
+labels_in_margin,,,,,false,false,,,,,,,,,,,,
+fontstyle,,,,,normal,normal,,,,,,,,,,,,
+color_arrow,,,,,black,black,,,,,,,,,,,,
+show_data_range,,,,,,,true,true,true,true,true,,,,,true,,
+show_labels,,,,,,,true,,,,,,,,,,,
+use_summit,,,,,,,true,,,,,,,,,,,
+width_adjust,,,,,,,1.5,,,,,,,,,,,
+type,,,,,,,peak,fill,fill,matrix,,,,,,fill,,
+negative_color,,,,,,,,not set,not set,,,,,,,not set,,
+nans_to_zeros,,,,,,,,false,false,,,,,,,false,,
+summary_method,,,,,,,,mean,not set,,,,,,,mean,,
+number_of_bins,,,,,,,,700,700,,,,,,,700,,
+transform,,,,,,,,no,no,,,no,no,,,no,,
+log_pseudocount,,,,,,,,0,0,,,,,,,0,,
+y_axis_values,,,,,,,,transformed,transformed,,,,,,,transformed,,
+second_file*,,,,,,,,not set,not set,,,,,,,,,
+operation*,,,,,,,,file,file,,,,,,,,,
+grid,,,,,,,,false,false,,,,,,,false,,
+rasterize,,,,,,,,,false,true,,true,true,false,,,,
+pos_score_in_bin,,,,,,,,,,center,,,,,,,,
+plot_horizontal_lines,,,,,,,,,,false,,,,,,,,
+colormap,,,,,,,,,,viridis,,RdYlBu_r,RdYlBu_r,,,,,
+individual_color,,,,,,,,,,grey,,,,,,,,
+summary_color,,,,,,,,,,#1f77b4,,,,,,,,
+depth,,,,,,,,,,,,100000,,,,,,
+show_masked_bins,,,,,,,,,,,,false,false,,,,,
+scale_factor,,,,,,,,,,,,1,1,,,,,
+file_index,,,,,,,,,,,,,,not set,,,,
+color_identical,,,,,,,,,,,,,,black,,,,
+color_mismatch,,,,,,,,,,,,,,grey,,,,
+color_gap,,,,,,,,,,,,,,lightgrey,,,,
+species_order,,,,,,,,,,,,,,not set,,,,
+species_labels,,,,,,,,,,,,,,not set,,,,
+species_order_only,,,,,,,,,,,,,,false,,,,
+display_ref_seq,,,,,,,,,,,,,,false,,,,
+x_center,,,,,,,,,,,,,,,not set,,,
+size,,,,,,,,,,,,,,,not set,,,
+scalebar_start_position,,,,,,,,,,,,,,,not set,,,
+scalebar_end_position,,,,,,,,,,,,,,,not set,,,
+bw_color,,,,,,,,,,,,,,,,#33a02c,,
+link_color,,,,,,,,,,,,,,,,blue,,
+link_alpha,,,,,,,,,,,,,,,,1,,
+link_line_width,,,,,,,,,,,,,,,,not set,,
+link_line_style,,,,,,,,,,,,,,,,solid,,
+link_max_value,,,,,,,,,,,,,,,,not set,,
+link_min_value,,,,,,,,,,,,,,,,not set,,
+link_scale_height,,,,,,,,,,,,,,,,1,,
+link_scale_line_width,,,,,,,,,,,,,,,,2,,
+link_labels,,,,,,,,,,,,,,,,true,,
+link_fontsize,,,,,,,,,,,,,,,,not set,,
+zorder,,,,,,,,,,,,,,,,,10,-100