Merge work from Latent model - #1251

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jtmccr1 wants to merge 23 commits into

mainfrom

Commits on Jan 31, 2025

adds MarkovRewardDensityCalculator for comparing implementations
jtmccr1
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b7d3b2b
updates latent model to use TwoStateSericolaMR
jtmccr1
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6ab496c
adds indicatorProductparameter to sample 0 without touching treeparametermodel
jtmccr1
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1e5b3f1

Commits on Feb 5, 2025

latent model iterates over all nodes
jtmccr1
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f2fd62b

Commits on Feb 6, 2025

adds option to disallow latency on root children
jtmccr1
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22da8c0

Commits on Mar 8, 2025

fully implements option to disallow latency on root children
jtmccr1
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5ebe5fc

Commits on Mar 12, 2025

Revert "fully implements option to disallow latency on root children"
jtmccr1
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54447bb
adds epsilon to xml
jtmccr1
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af3cf91

Commits on Sep 17, 2025

allow for excluding root children from latency - test
jtmccr1
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5adaee3
pass epsilon from xml to model
jtmccr1
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93ab274

Commits on Sep 19, 2025

speed up cdf for when there is no latency
jtmccr1
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f695718
caching for some speed ups
jtmccr1
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6c428dd
cache powers and loop calcs for more speed
jtmccr1
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51ed95e

Commits on Oct 14, 2025

move latent work to package adds latent statistic
jtmccr1
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edf73f9

Commits on Oct 22, 2025

correcting parser path in properties
jtmccr1
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d1dcc79

Commits on Mar 12, 2026

Merge branch 'main' into latentModel - in preparation for reverse
jtmccr1
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81acf93
fixes copyright character
jtmccr1
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321dd39
adds short label arguments to MRDC (and builds)
jtmccr1
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4fe5fba

Commits on Mar 13, 2026

Commits on Aug 28, 2026

allows local clocks on external branches
jtmccr1
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b39f515