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Some more updates to two-pathogen model implementation. BEAST CI #2561: Commit 073988a pushed by mandevgill
4m 9s nonparametrics
nonparametrics
4m 9s
Fix amino acid substitution model XML generation BEAST CI #2560: Commit 58a368c pushed by plemey
3m 40s main
main
3m 40s
pages build and deployment pages-build-deployment #451: by plemey
1m 17s main
main
1m 17s
Lots of updates to two-pathogen model implementation. BEAST CI #2559: Commit 8c70ea9 pushed by mandevgill
4m 14s nonparametrics
nonparametrics
4m 14s
Add joint reward mixture category CTS operator BEAST CI #2558: Commit 7cfc621 pushed by fil-monti
6m 11s feature/reward-category-dynamic-ordering
feature/reward-category-dynamic-ordering
6m 11s
allows local clocks on external branches BEAST CI #2557: Commit b39f515 pushed by jtmccr1
3m 52s latentModel
latentModel
3m 52s
Remove leftover merge conflict marker from development parsers BEAST CI #2556: Commit 4652ac3 pushed by plemey
4m 5s main
main
4m 5s
pages build and deployment pages-build-deployment #450: by plemey
1m 13s main
main
1m 13s
Add the Q.3Di.AF and Q.3Di.LLM structural substitution models BEAST CI #2555: Commit c66b383 pushed by plemey
3m 36s main
main
3m 36s
pages build and deployment pages-build-deployment #449: by plemey
1m 17s main
main
1m 17s
Refactor MASCOT likelihood delegate split BEAST CI #2554: Commit feca487 pushed by fil-monti
3m 46s mascot-adjoints
mascot-adjoints
3m 46s
Add branch-local CTS slice operator for reward mixtures BEAST CI #2553: Commit 9d01f36 pushed by fil-monti
6m 35s feature/reward-category-dynamic-ordering
feature/reward-category-dynamic-ordering
6m 35s
weighting gradients by root frequencies and when scale-by-frequency i… BEAST CI #2552: Commit fbe632e pushed by fil-monti
4m 32s matrix_vector
matrix_vector
4m 32s
Preserve discrete branch-length cache for gradient restores BEAST CI #2551: Commit b9bafd5 pushed by fil-monti
4m 53s matrix_vector
matrix_vector
4m 53s
fixing the ThreeDI matrix BEAST CI #2550: Commit d7de7b2 pushed by plemey
3m 17s hmc-clock
hmc-clock
3m 17s
consumes existing BranchIntervalOperation objects BEAST CI #2549: Commit 678c9e5 pushed by yucais
6m 35s mascot-adjoints
mascot-adjoints
6m 35s
Updates to grid representation to align change points for both pathog… BEAST CI #2548: Commit 107696b pushed by mandevgill
4m 10s nonparametrics
nonparametrics
4m 10s
fixing the ThreeDI matrix BEAST CI #2547: Commit 05753f4 pushed by plemey
4m 29s main
main
4m 29s
pages build and deployment pages-build-deployment #448: by plemey
1m 46s main
main
1m 46s
Stabilize reward-mixture samplers with atomic pseudo-prior BEAST CI #2546: Commit a203fd7 pushed by fil-monti
6m 50s feature/reward-category-dynamic-ordering
feature/reward-category-dynamic-ordering
6m 50s
Align BEAST BEAGLE API with project-local matrix-vector runtime BEAST CI #2545: Commit a810be2 pushed by fil-monti
5m 19s feature/reward-category-dynamic-ordering
feature/reward-category-dynamic-ordering
5m 19s
refactor to share the same walk BEAST CI #2544: Commit 82ceeea pushed by yucais
4m 0s mascot-adjoints
mascot-adjoints
4m 0s
Stabilize preorder spectral products BEAST CI #2543: Commit 2da1a18 pushed by fil-monti
4m 58s matrix_vector
matrix_vector
4m 58s
Parse affine CTMC gradient mode BEAST CI #2542: Commit 95faa32 pushed by fil-monti
4m 48s matrix_vector
matrix_vector
4m 48s
Use matrix_vector BEAGLE in CI BEAST CI #2541: Commit df1267b pushed by fil-monti
5m 41s matrix_vector
matrix_vector
5m 41s