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ci: expose Jupyter to R kernel setup #202

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2c06a90
ci: expose Jupyter to R kernel setup
mhasoba Oct 4, 2026
c89c8ae
ci: register R kernel with Jupyter directly
mhasoba Oct 4, 2026
602c45f
ci: avoid stdlib shadowing during notebook build
mhasoba Oct 4, 2026
fe9c6ea
docs: use standard NaN in pandas example
mhasoba Oct 4, 2026
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6 changes: 4 additions & 2 deletions .github/workflows/deploy-book.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -51,8 +51,10 @@ jobs:
env:
CRAN_REPO: https://packagemanager.posit.co/cran/__linux__/noble/2026-10-01
run: |
. .venv/bin/activate
Rscript -e 'options(repos = c(CRAN = Sys.getenv("CRAN_REPO"))); install.packages(readLines("requirements-r.txt"))'
Rscript -e 'IRkernel::installspec(name = "ir", displayname = "R", user = TRUE)'
ir_kernel_spec=$(Rscript -e 'cat(system.file("kernelspec", package = "IRkernel"))')
jupyter kernelspec install --user --replace --name ir "$ir_kernel_spec"

- name: Verify notebook kernels
run: |
Expand Down Expand Up @@ -93,7 +95,7 @@ jobs:
env:
MQB_NOTEBOOK_REPOSITORY: ${{ github.event.pull_request.head.repo.full_name || github.repository }}
MQB_NOTEBOOK_REF: ${{ github.event.pull_request.head.sha || github.sha }}
run: PYTHONPATH="$GITHUB_WORKSPACE:$GITHUB_WORKSPACE/content/code" make test BOOK_CONFIG=content/_config_ci.yml BOOK_BUILD_ARGS=--all
run: PYTHONPATH="$GITHUB_WORKSPACE" make test BOOK_CONFIG=content/_config_ci.yml BOOK_BUILD_ARGS=--all

- name: Upload built book
uses: actions/upload-artifact@v7
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4 changes: 2 additions & 2 deletions content/notebooks/appendix-data-python.ipynb
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Expand Up @@ -244,7 +244,7 @@
},
{
"cell_type": "code",
"execution_count": 5,
"execution_count": null,
"metadata": {},
"outputs": [
{
Expand Down Expand Up @@ -306,7 +306,7 @@
"MyDF = pd.DataFrame({\n",
" 'col1': ['Var1', 'Var2', 'Var3', 'Var4'],\n",
" 'col2': ['Grass', 'rabbit', 'Fox', 'Wolf'],\n",
" 'col3': [1, 2, sc.nan, 4]\n",
" 'col3': [1, 2, float('nan'), 4]\n",
"})\n",
"\n",
"MyDF"
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