Skip to content
Open
Show file tree
Hide file tree
Changes from 5 commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
42 changes: 42 additions & 0 deletions include/DataWriter.hpp
Original file line number Diff line number Diff line change
@@ -0,0 +1,42 @@
#ifndef DATAWRITER_HPP
#define DATAWRITER_HPP

#include <blockingconcurrentqueue.h>
Comment thread
MichalSzandar marked this conversation as resolved.
Outdated

#include <EEGData.hpp>
Comment thread
MichalSzandar marked this conversation as resolved.
Outdated
#include <Marker.hpp>
#include <atomic>
#include <fstream>
#include <memory>
#include <string>
#include <thread>

class DataWriter {
public:
DataWriter() = default;
~DataWriter();

DataWriter(const DataWriter&) = delete;
DataWriter& operator=(const DataWriter&) = delete;
DataWriter(DataWriter&&) = delete;
DataWriter& operator=(DataWriter&&) = delete;

void start(const std::string& filePath,
std::shared_ptr<moodycamel::ConcurrentQueue<EEGData>> eegQueue,
std::shared_ptr<moodycamel::ConcurrentQueue<Marker>> markerQueue);
void stop();

private:
void writeLoop();
void writeEEGData(const EEGData& data);
void writeMarker(const Marker& marker);

std::ofstream outputFile;
std::shared_ptr<moodycamel::ConcurrentQueue<EEGData>> eegQueue;
std::shared_ptr<moodycamel::ConcurrentQueue<Marker>> markerQueue;
std::thread writerThread;
Comment thread
MichalSzandar marked this conversation as resolved.
Outdated

std::atomic<bool> stopRequested{false};
};

#endif // DATAWRITER_HPP
20 changes: 20 additions & 0 deletions include/EEGData.hpp
Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
#ifndef EEGDATA_HPP
#define EEGDATA_HPP

#include <utility>
#include <vector>

struct EEGData {
std::vector<float> channels;
double timestamp = 0.0;

EEGData() = default;

EEGData(const std::vector<float>& channelValues, double sampleTimestamp)
: channels(channelValues), timestamp(sampleTimestamp) {}

EEGData(std::vector<float>&& channelValues, double sampleTimestamp)
: channels(std::move(channelValues)), timestamp(sampleTimestamp) {}
};

#endif // EEGDATA_HPP
Comment on lines +1 to +20

Copy link
Copy Markdown
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I would consider moving EEGData and Marker classes to seperate directory like include/data_structures or something like that

20 changes: 20 additions & 0 deletions include/Marker.hpp
Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
#ifndef MARKER_HPP
#define MARKER_HPP

#include <string>
#include <utility>

struct Marker {
std::string eventName;
double timestamp = 0.0;

Marker() = default;

Marker(const std::string& name, double markerTimestamp)
: eventName(name), timestamp(markerTimestamp) {}

Marker(std::string&& name, double markerTimestamp)
: eventName(std::move(name)), timestamp(markerTimestamp) {}
};

#endif // MARKER_HPP
1 change: 1 addition & 0 deletions src/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,7 @@ protobuf_generate_cpp(PROTO_SRCS PROTO_HDRS ${CMAKE_CURRENT_SOURCE_DIR}/../proto

add_library(runtime_core OBJECT
Runtime.cpp
DataWriter.cpp
parser/Parser.cpp
scene/components/ComponentRegistry.cpp
scene/components/BlinkComponent.cpp
Expand Down
111 changes: 111 additions & 0 deletions src/DataWriter.cpp
Original file line number Diff line number Diff line change
@@ -0,0 +1,111 @@
#include <DataWriter.hpp>
#include <chrono>
#include <sstream>
#include <stdexcept>
#include <thread>
#include <utility>

// anonymous namespace here for private utility-style definitions
namespace {
constexpr auto kWriteLoopSleep = std::chrono::milliseconds(10);

std::string formatChannels(const std::vector<float>& channels) {
Comment thread
MichalSzandar marked this conversation as resolved.
Outdated
std::ostringstream stream;
for (std::size_t index = 0; index < channels.size(); ++index) {
if (index > 0) {
stream << ',';
}
stream << channels[index];
}
return stream.str();
}
} // namespace

DataWriter::~DataWriter() { stop(); }

void DataWriter::start(const std::string& filePath,
std::shared_ptr<moodycamel::ConcurrentQueue<EEGData>> eegQueue,
std::shared_ptr<moodycamel::ConcurrentQueue<Marker>> markerQueue) {
stop();

outputFile.open(filePath, std::ios::out | std::ios::trunc);
if (!outputFile.is_open()) {
throw std::runtime_error("Failed to open data writer output file: " + filePath);
}

this->eegQueue = std::move(eegQueue);
this->markerQueue = std::move(markerQueue);
stopRequested.store(false);

outputFile << "type,timestamp,payload\n";
writerThread = std::thread(&DataWriter::writeLoop, this);
}

void DataWriter::stop() {
stopRequested.store(true);

if (writerThread.joinable()) {
writerThread.join();
}

if (outputFile.is_open()) {
outputFile.flush();
outputFile.close();
}
}

void DataWriter::writeLoop() {
while (!stopRequested.load()) {
bool wroteData = false;

if (eegQueue) {
EEGData eegData;
while (eegQueue->try_dequeue(eegData)) {
writeEEGData(eegData);
wroteData = true;
}
}

if (markerQueue) {
Marker marker;
while (markerQueue->try_dequeue(marker)) {
writeMarker(marker);
wroteData = true;
}
}

if (!wroteData) {
std::this_thread::sleep_for(kWriteLoopSleep);
}
}

if (eegQueue) {
EEGData eegData;
while (eegQueue->try_dequeue(eegData)) {
writeEEGData(eegData);
}
}

if (markerQueue) {
Marker marker;
while (markerQueue->try_dequeue(marker)) {
writeMarker(marker);
}
}
}

void DataWriter::writeEEGData(const EEGData& data) {
if (!outputFile.is_open()) {
Comment thread
MichalSzandar marked this conversation as resolved.
Outdated
return;
}

outputFile << "eeg," << data.timestamp << ",\"" << formatChannels(data.channels) << '"' << '\n';
}

void DataWriter::writeMarker(const Marker& marker) {
if (!outputFile.is_open()) {
Comment thread
MichalSzandar marked this conversation as resolved.
Outdated
return;
}

outputFile << "marker," << marker.timestamp << ",\"" << marker.eventName << '"' << '\n';
}
83 changes: 83 additions & 0 deletions tests/unit_tests/data_writer_test.cpp
Original file line number Diff line number Diff line change
@@ -0,0 +1,83 @@
#include <gtest/gtest.h>

#include <DataWriter.hpp>
#include <chrono>
#include <filesystem>
#include <fstream>
#include <memory>
#include <string>
#include <thread>
#include <vector>

namespace {
namespace fs = std::filesystem;

constexpr float kChannelOne = 1.25F;
constexpr float kChannelTwo = 2.5F;
constexpr float kChannelThree = 3.75F;
constexpr double kEegTimestamp = 12.5;
constexpr double kMarkerTimestamp = 13.25;
constexpr auto kWriteWait = std::chrono::milliseconds(50);

fs::path makeTempFilePath(const std::string& nameStem) {
const auto uniqueSuffix =
std::to_string(std::chrono::steady_clock::now().time_since_epoch().count());
return fs::temp_directory_path() / (nameStem + "_" + uniqueSuffix + ".csv");
}

std::vector<std::string> readAllLines(const fs::path& filePath) {
std::ifstream input(filePath);
std::vector<std::string> lines;
std::string line;

while (std::getline(input, line)) {
lines.push_back(line);
}

return lines;
}
} // namespace

TEST(DataWriterTest, WritesCsvHeaderOnStart) {
const auto filePath = makeTempFilePath("datawriter_header");

auto eegQueue = std::make_shared<moodycamel::ConcurrentQueue<EEGData>>();
auto markerQueue = std::make_shared<moodycamel::ConcurrentQueue<Marker>>();

{
DataWriter writer;
writer.start(filePath.string(), eegQueue, markerQueue);
writer.stop();
}

const auto lines = readAllLines(filePath);
ASSERT_FALSE(lines.empty());
EXPECT_EQ(lines.front(), "type,timestamp,payload");

fs::remove(filePath);
}

TEST(DataWriterTest, FlushesEegAndMarkerRecords) {
const auto filePath = makeTempFilePath("datawriter_records");

auto eegQueue = std::make_shared<moodycamel::ConcurrentQueue<EEGData>>();
auto markerQueue = std::make_shared<moodycamel::ConcurrentQueue<Marker>>();

eegQueue->enqueue(EEGData{{kChannelOne, kChannelTwo, kChannelThree}, kEegTimestamp});
markerQueue->enqueue(Marker{"stimulus_on", kMarkerTimestamp});

{
DataWriter writer;
writer.start(filePath.string(), eegQueue, markerQueue);
std::this_thread::sleep_for(kWriteWait);
writer.stop();
}

const auto lines = readAllLines(filePath);
ASSERT_GE(lines.size(), 3U);
EXPECT_EQ(lines[0], "type,timestamp,payload");
EXPECT_EQ(lines[1], "eeg,12.5,\"1.25,2.5,3.75\"");
EXPECT_EQ(lines[2], "marker,13.25,\"stimulus_on\"");

fs::remove(filePath);
}
Loading