auspice

Here are 8 public repositories matching this topic...

nextstrain / mpox

Nextstrain build for mpox virus

metadata bioinformatics pipeline pathogen phylogenetics genbank augur nextstrain auspice virus-evolution genomic-epidemiology monkeypox mpox

Updated Aug 27, 2026
Python

cmzmasek / forester

Star

forester is a collection of open-source libraries and tools for genomics and evolutionary biology research. It includes the tree viewer Archaeopteryx.

visualization genomics taxonomy evolution computational-biology phylogenetic-trees beast phylogenetics virology archaeopteryx paleontology time-trees tanglegram phyloxml nextstrain auspice mad-rooting

Updated Sep 1, 2026
Java

BCCDC-PHL / fluflo

Star

Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.

nextflow phylogenetics trees nextstrain auspice microbes

Updated Jan 6, 2026
Nextflow

BCCDC-PHL / covflo

Star

Nextflow pipeline for generation of BCCDC routine SARS-CoV-2 phylogenetic trees to be visualized with Auspice.

nextflow phylogenetics trees viral evolutionary nextstrain auspice sars-cov-2 microbe

Updated Mar 25, 2026
Python

hivlab / sarscov2-epidemiology

Star

Visualisation of SARS-CoV-2 genomic epidemiology

visualisation dataset estonia auspice sars-cov-2

Updated Feb 20, 2023
Python

nathaliax3 / hiv-1_BBR

Star

auspice

Updated Oct 24, 2019

cmzmasek / archaeopteryx

Star

Archaeopteryx — a desktop viewer for publication-quality phylogenetic tree figures

visualization genomics genetics taxonomy evolution computational-biology phylogenetic-trees beast phylogenetics virology archaeopteryx paleontology time-trees tanglegram phyloxml nextstrain auspice mad-rooting

Updated Sep 1, 2026

adnanhaider81 / pakistan-sars-cov-2-nextstrain-build

Star

Reproducible workflow powering the maintained Pakistan SARS-CoV-2 Nextstrain community build

bioinformatics public-health pakistan pathogen-genomics nextstrain auspice ncov sars-cov-2 genomic-epidemiology gisaid

Updated Aug 28, 2026
Shell

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