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Add example to databases and fixed splice bug emitting introns as variants - #37

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jonas-fuchs merged 19 commits into
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Aug 24, 2026
Merged

Add example to databases and fixed splice bug emitting introns as variants#37
jonas-fuchs merged 19 commits into
masterfrom
dev

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  • fixed bug which would lead to large variants being called for spliced features
  • examples can be supplied with the database
  • new example button in the webapp
  • fixed how some tables are displayed
  • fixed steps during showcase
  • added better error message for mismatches during init
  • adjusted plot text

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codecov Bot commented Aug 21, 2026

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Codecov Report

❌ Patch coverage is 90.60773% with 17 lines in your changes missing coverage. Please review.

Files with missing lines Patch % Lines
respro/core/vcf_remap.py 68.00% 5 Missing and 3 partials ⚠️
respro/db/cache.py 66.66% 3 Missing and 1 partial ⚠️
respro/core/alignment.py 94.91% 1 Missing and 2 partials ⚠️
respro/cli/init.py 90.47% 1 Missing and 1 partial ⚠️

📢 Thoughts on this report? Let us know!

Comment thread tests/test_config.py Fixed
Comment thread tests/test_features.py Fixed
jonas-fuchs and others added 8 commits August 24, 2026 12:24
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Co-authored-by: Copilot Autofix powered by AI <62310815+github-advanced-security[bot]@users.noreply.github.com>
…ring sanitization'

Co-authored-by: Copilot Autofix powered by AI <62310815+github-advanced-security[bot]@users.noreply.github.com>
@jonas-fuchs
jonas-fuchs merged commit eef1e9e into master Aug 24, 2026
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@jonas-fuchs
jonas-fuchs deleted the dev branch August 24, 2026 12:47
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2 participants