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Add observationUnitDbId as a valid header to phenotype upload info#6084

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topic/update_phenotype_upload_info
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Add observationUnitDbId as a valid header to phenotype upload info#6084
bm743 wants to merge 1 commit into
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topic/update_phenotype_upload_info

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@bm743
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@bm743 bm743 commented May 1, 2026

Description

Fixes #6011

Checklist

  • Refactoring only
  • Documentation only
  • Fixture update only
  • Bug fix
    • The relevant issue has been closed.
    • Further work is required.
  • New feature
    • Relevant tests have been created and run.
    • Data was added to the fixture
      • Data was added via a patch in /t/data/fixture/patches/.
    • User-Facing Change
      • The user manual in /docs has been updated.
    • Any new Perl has been documented using perldoc.
    • Any new JavaScript has been documented using JSDoc.
    • Any new legacy JavaScript has been moved from /js to /js/source/legacy.

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@ryan-preble ryan-preble left a comment

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Does the relevant file parser have a way to check whether it is getting a uniquename or a stock_id and search for the right stock accordingly?

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bm743 commented May 7, 2026

Does the relevant file parser have a way to check whether it is getting a uniquename or a stock_id and search for the right stock accordingly?

You're right, this column in the phenotype spreadsheet upload only works for observationUnitName. I'll have to ask Heather if she wants the ID added to this upload or if she was referring to something else.

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@lukasmueller lukasmueller left a comment

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:-)

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@ryan-preble ryan-preble left a comment

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If observationUnitDbId is added as a valid header it also needs to be an alias on the upload parser

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Add ObservationUnitDbId as option for unique id in phenotype spreadsheet upload

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