Issues

• Fails to configure with CMake 4.5

  soedinglab/metaeuk#99 · Filter by author yurivict opened on Oct 5, 2026

• metaeuk vs mmseqs TSV output files

  soedinglab/metaeuk#98 · Filter by author saracargnelutti01-ops opened on Sep 8, 2026
  1

• Usage of mmseqs dbs with metauk easy-predict and taxtocontig

  soedinglab/metaeuk#97 · Filter by author saracargnelutti01-ops opened on Aug 28, 2026
  6

• Error in metaeuk taxtocontig: "Missing key 8781 in tax result"

  soedinglab/metaeuk#94 · Filter by author cici-Jing opened on Aug 17, 2025
  2

• [Feature request] Add option to exclude symlink creation for temporary files (for easy use with AWS S3)

  soedinglab/metaeuk#93 · Filter by author jolespin opened on Sep 30, 2024
  4

• How can i annotate my eukaryotic MAGs by metaeuk?

  soedinglab/metaeuk#92 · Filter by author YoungerRen opened on Sep 6, 2024
  3

• Cannot write fas.0, unitesetstofasta step died

  soedinglab/metaeuk#91 · Filter by author katharinedickson opened on Aug 21, 2024
  9

• [Feature Request] If amino acid input is detected. Exit with non-zero error code.

  enhancement
  soedinglab/metaeuk#90 · Filter by author jolespin opened on Jun 9, 2024
  

• Settings to produce a convertalis table to output a blast outfm6 table.

  soedinglab/metaeuk#87 · Filter by author JoshuaTCooper opened on Feb 1, 2024
  1

• bundles for release tagged 6-a5d39d9 self-report version as fba1b3d5a6009a46968734adca0ff15ac98bb732

  soedinglab/metaeuk#86 · Filter by author douglasgscofield opened on Jan 24, 2024

• Metaeuk: GITDIR-NOTFOUND

  soedinglab/metaeuk#84 · Filter by author ReemaSingh opened on Oct 31, 2023
  1

• Can metaeuk enforce splice site checking?

  soedinglab/metaeuk#83 · Filter by author melop opened on Sep 1, 2023
  2

• "tmp" directory does not automatically remove

  soedinglab/metaeuk#82 · Filter by author Zjianglin opened on Aug 22, 2023
  2

• Your opinion on Miniprot

  soedinglab/metaeuk#81 · Filter by author shelkmike opened on Jul 13, 2023
  4

• [Question] Can MetaEuk utilize the MMSEQS2 clustering results?

  soedinglab/metaeuk#78 · Filter by author jolespin opened on May 12, 2023
  2

• Not support very long chromosomes?

  soedinglab/metaeuk#77 · Filter by author zhangrengang opened on May 9, 2023
  8

• Annotation of recent assembly genome using MetaEuk

  soedinglab/metaeuk#58 · Filter by author BenAawf opened on Feb 15, 2023
  1

• Fails to build where OpenMP isn't available when -DREQUIRE_OPENMP=0 is set

  bug
  soedinglab/metaeuk#55 · Filter by author yurivict opened on Dec 10, 2022
  

• Split big CDS to subCDS using gff

  soedinglab/metaeuk#52 · Filter by author ucabuk opened on Nov 8, 2022
  1

• Calculation of alignments step died

  soedinglab/metaeuk#51 · Filter by author AlexSongh opened on Aug 14, 2022
  10

• [Question] How to estimate memory usage?

  soedinglab/metaeuk#49 · Filter by author jolespin opened on Aug 1, 2022
  1

• compile from source have some problems

  soedinglab/metaeuk#48 · Filter by author jamdodot opened on Jul 19, 2022
  24

• How can I use metaeuk to annotation genome without reference

  soedinglab/metaeuk#46 · Filter by author Nana7m1 opened on Apr 30, 2022
  4

• Error in MetaEuk during BUSCO run

  soedinglab/metaeuk#45 · Filter by author berkelem opened on Apr 29, 2022
  5

• Multiple round of metaeuk

  soedinglab/metaeuk#44 · Filter by author xiekunwhy opened on Apr 28, 2022
  1