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Merged
kujaku11 merged 15 commits into from
Apr 27, 2026
Merged

Update imports for splitting mth5 to other modules #395

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d00a4c6
Update tests.yaml
kujaku11 Apr 15, 2026
b670dc9
Update frequency_band_helpers.py
kujaku11 Apr 15, 2026
ba9ca19
Update mth5 installation method in workflow
kujaku11 Apr 15, 2026
5abb7fa
updated notebooks to use appropriate arguments
kujaku11 Apr 17, 2026
c0a6eca
Update mt_metadata installation to use GitHub patch
kujaku11 Apr 17, 2026
2c14804
Toggle installation of mt_metadata package
kujaku11 Apr 17, 2026
32b1fa9
Update installation command for mth5 package
kujaku11 Apr 23, 2026
7e177f3
Update mth5 installation reference in workflow
kujaku11 Apr 23, 2026
8d0c875
Bump mth5 minimum version to 0.6.7
kujaku11 Apr 23, 2026
4d15a06
Remove mt_metadata/mth5 installs from CI workflows
kujaku11 Apr 23, 2026
11b3a3d
Bump version: 0.6.1 → 0.6.2
github-actions[bot] Apr 24, 2026
af806d9
chore: bump version to and update changelog [skip ci]
github-actions[bot] Apr 24, 2026
e21c955
add bump version
kkappler Apr 24, 2026
e5d114f
make publish on merged PR, does not bump-version
kkappler Apr 24, 2026
82b91f6
Merge branch 'test_mth5_split' of kkappler-github:simpeg/aurora into …
kkappler Apr 24, 2026
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3 changes: 0 additions & 3 deletions .github/workflows/test_notebooks.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -57,9 +57,6 @@ jobs:
uv pip install --upgrade pip
uv pip install 'setuptools<68'
uv pip install -e ".[dev,test]"
uv pip install mt_metadata[obspy]
uv pip install "mt_metadata[obspy]"
uv pip install mth5
uv pip install git+https://github.com/kujaku11/mth5_test_data.git
# Explicitly include nbconvert & ipykernel
uv pip install jupyter nbconvert nbformat ipykernel
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10 changes: 0 additions & 10 deletions .github/workflows/tests.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -48,16 +48,6 @@ jobs:
uv pip install --upgrade pip
uv pip install 'setuptools<68'
uv pip install -e ".[dev,test]"
uv pip install mt_metadata[obspy]
# uv pip install "mt_metadata[obspy] @ git+https://github.com/kujaku11/mt_metadata.git@patches"
# uv pip install git+https://github.com/kujaku11/mth5.git@patches
# uv pip install "mt_metadata[obspy] @ git+https://github.com/kujaku11/mt_metadata.git"
# uv pip install git+https://github.com/kujaku11/mth5.git
uv pip install "mt_metadata[obspy]"
uv pip install mth5


# uv pip install mth5
uv pip install git+https://github.com/kujaku11/mth5_test_data.git
# Explicitly include nbconvert & ipykernel
uv pip install jupyter nbconvert nbformat ipykernel pytest pytest-cov pytest-timeout codecov
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11 changes: 5 additions & 6 deletions aurora/time_series/frequency_band_helpers.py
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Original file line number Diff line number Diff line change
Expand Up @@ -2,14 +2,13 @@
This module contains functions that are associated with time series of Fourier coefficients
TODO: Move these methods to mth5.processing.spectre.frequency_band_helpers
"""
from loguru import logger
from mt_metadata.processing.aurora import (
DecimationLevel as AuroraDecimationLevel,
)
from mt_metadata.processing.aurora import Band
from mth5.timeseries.spectre.spectrogram import extract_band
from typing import Optional, Tuple

import xarray as xr
from loguru import logger
from mt_metadata.processing.aurora import Band
from mt_metadata.processing.aurora import DecimationLevel as AuroraDecimationLevel
from mt_timeseries.spectre.spectrogram import extract_band


def get_band_for_tf_estimate(
Expand Down
12 changes: 6 additions & 6 deletions docs/examples/operate_aurora.ipynb
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Expand Up @@ -2968,7 +2968,7 @@
},
{
"cell_type": "code",
"execution_count": 35,
"execution_count": null,
"metadata": {},
"outputs": [
{
Expand All @@ -2983,12 +2983,12 @@
}
],
"source": [
"tf_cls.write(fn=\"emtfxml_test.xml\", file_type=\"emtfxml\")"
"tf_cls.write(\"emtfxml_test.xml\", file_type=\"emtfxml\")"
]
},
{
"cell_type": "code",
"execution_count": 36,
"execution_count": null,
"metadata": {},
"outputs": [
{
Expand Down Expand Up @@ -3016,12 +3016,12 @@
}
],
"source": [
"tf_cls.write(fn=\"emtfxml_test.edi\", file_type=\"edi\")"
"tf_cls.write(\"emtfxml_test.edi\", file_type=\"edi\")"
]
},
{
"cell_type": "code",
"execution_count": 37,
"execution_count": null,
"metadata": {},
"outputs": [
{
Expand All @@ -3036,7 +3036,7 @@
}
],
"source": [
"tf_cls.write(fn=\"emtfxml_test.zss\", file_type=\"zmm\")"
"tf_cls.write(\"emtfxml_test.zss\", file_type=\"zmm\")"
]
},
{
Expand Down
12 changes: 6 additions & 6 deletions docs/tutorials/process_cas04_multiple_station.ipynb
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Expand Up @@ -3033,7 +3033,7 @@
},
{
"cell_type": "code",
"execution_count": 19,
"execution_count": null,
"id": "2ee6e117-c7e1-40ba-9981-5f2a189e404a",
"metadata": {},
"outputs": [
Expand All @@ -3049,9 +3049,9 @@
}
],
"source": [
"tf_cls.write(fn=f\"{tf_file_base}.xml\", file_type=\"emtfxml\")\n",
"tf_cls.write(fn=f\"{tf_file_base}.edi\", file_type=\"edi\")\n",
"tf_cls.write(fn=f\"{tf_file_base}.zrr\", file_type=\"zrr\")"
"tf_cls.write(f\"{tf_file_base}.xml\", file_type=\"emtfxml\")\n",
"tf_cls.write(f\"{tf_file_base}.edi\", file_type=\"edi\")\n",
"tf_cls.write(f\"{tf_file_base}.zrr\", file_type=\"zrr\")"
]
},
{
Expand Down Expand Up @@ -7048,7 +7048,7 @@
},
{
"cell_type": "code",
"execution_count": 45,
"execution_count": null,
"id": "358195b0",
"metadata": {},
"outputs": [
Expand Down Expand Up @@ -7077,7 +7077,7 @@
}
],
"source": [
"tf.write(fn=\"CAS04_rrNVR08.edi\", file_type=\"edi\")"
"tf.write(\"CAS04_rrNVR08.edi\", file_type=\"edi\")"
]
}
],
Expand Down
2 changes: 1 addition & 1 deletion pyproject.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,7 @@ classifiers = [
"Programming Language :: Python :: 3.12",
]
dependencies = [
"mth5>=0.6.0",
"mth5>=0.6.7",
"numba>=0.58",
"obspy",
"psutil",
Expand Down
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