Version 0.52

Fixing bug that overrode motif finding when providing initial motif file.
Adding option to leave initial motifs fixed.

Version 0.51

Version 0.51 (2021-06-04): Fixing a bug that resulted in incorrect sequences being reported in the ".events" file. This fix does not impact the locations of discovered peaks or subtype identification - those results should be exactly the same as in Version 0.5. Also in this update, --exclude will act like --excludebed if a BED file is provided.

Version 0.41

Version 0.41 (2019-05-24): Updates on HTML output, heatmap and sequence plots. Create extra outputs in event file. Updates on replicate handling options. Bug fixes.

Version 0.5

Version 0.5 (2020-07-09): Fixing mishandling of multimapped reads in BWA output BAM files. Option --nonunique now works as expected.

Version 0.3

Version 0.3 (2019-01-15): Introducing --lenient and --lenientplus modes for determining alternate ways of defining final binding events when replicated experiments are present. Output files now consist of only one ".events" file (to reduce confusion), files listing binding events found in each replicate, and a file reporting on the replication status of each binding event. Fixed several bugs, including relating to the final heatmap and composite plots displayed on the output HTML page, and a bug in --noclustering.