ISA-L compression support evaluation. #1908
Draft
Cirrus CI / macosx + clang CFLAGS:-g -O3 -Wall -arch arm64 -arch x86_64 USE_CONFIG:yes USE_LIBDEFLATE:yes
failed
Apr 29, 2025 in 27s
Task Summary
Instruction compile failed in 00:06
Details
ℹ️ Scheduling was delayed due to a concurrency limit on community tasks
✅ 00:01 clone
✅ 00:06 package_install
✅ 00:06 libdeflate
❌ 00:06 compile
checking for gmtime_r... yes
checking for fsync... yes
checking for drand48... yes
checking for srand48_deterministic... no
checking for getauxval... no
checking for elf_aux_info... no
checking for posix_memalign... yes
checking whether fdatasync is declared... no
checking for __attribute__((constructor))... yes
checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes
checking for library containing dlsym... none required
checking whether the compiler accepts -rdynamic... yes
checking for library containing log... none required
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for library containing recv... none required
checking for bzlib.h... yes
checking for BZ2_bzBuffToBuffCompress in -lbz2... yes
checking for lzma.h... no
checking for lzma_easy_buffer_encode in -llzma... yes
checking whether htscodecs files are present... yes
checking for libdeflate.h... yes
checking for libdeflate_deflate_compress in -ldeflate... yes
checking for curl/curl.h... yes
checking for curl_easy_pause in -lcurl... no
checking for curl_easy_init in -lcurl... no
configure: WARNING: libcurl not enabled: library not found
configure: WARNING: GCS support not enabled: requires libcurl support
configure: WARNING: S3 support not enabled: requires libcurl support
checking for library containing regcomp... no
configure: creating ./config.status
config.status: creating config.mk
config.status: creating htslib.pc.tmp
config.status: creating config.h
config.status: linking htscodecs_bundled.mk to htscodecs.mk
make cc-version $MAKE_OPTS
Apple clang version 16.0.0 (clang-1600.0.26.4)
Target: arm64-apple-darwin23.6.0
Thread model: posix
InstalledDir: /Applications/Xcode_16.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin
if test "x$DO_MAINTAINER_CHECKS" = "xyes"; then
make maintainer-check $MAKE_OPTS
fi
make -j 4 $MAKE_OPTS
clang -g -O3 -Wall -arch arm64 -arch x86_64 -fvisibility=hidden -Werror -I. -I/Users/admin/libdeflate -c -o kfunc.o kfunc.c
clang -g -O3 -Wall -arch arm64 -arch x86_64 -fvisibility=hidden -Werror -I. -I/Users/admin/libdeflate -c -o kstring.o kstring.c
clang -g -O3 -Wall -arch arm64 -arch x86_64 -fvisibility=hidden -Werror -I. -I/Users/admin/libdeflate -c -o bcf_sr_sort.o bcf_sr_sort.c
clang -g -O3 -Wall -arch arm64 -arch x86_64 -fvisibility=hidden -Werror -I. -I/Users/admin/libdeflate -c -o bgzf.o bgzf.c
bgzf.c:47:10: fatal error: 'isa-l.h' file not found
47 | #include <isa-l.h>
| ^~~~~~~~~
1 error generated.
make: *** [bgzf.o] Error 1
make: *** Waiting for unfinished jobs....
Exit status: 2
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