Number MHCs - #100

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ALGW71 wants to merge 23 commits into

mainfrom

Commits on May 1, 2025

Add a flag for SCFV to the number method.
ALGW71
committed
6b47f89
Simple CWC fix for SCFVs.
ALGW71
committed
940bfe9

Commits on Jun 12, 2025

Trial code for new SCFV method, not reliant on CWC. Need to document and test.
ALGW71
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8116ec5
More edits and testing on multi chain fasta.
ALGW71
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371c636

Commits on Jun 13, 2025

SCFV code when missing CWC is as good as ever. Now add back in CWC and create a fallback.
ALGW71
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b741e58
SCFV mode now working better - CWC does not work. Back to window method.
ALGW71
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14d0ad7
On test set 6/1133 are misnumbered but still ID as SCFVs.
ALGW71
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f52c9fd

Commits on Jun 16, 2025

Added comments for clarity.
ALGW71
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aeed5d3
Added comments for clarity.
ALGW71
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6cc98ba
Merge branch 'main' into scfv_testing
ALGW71
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c8e60bc
Add SCFV test file.
ALGW71
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c3b2453
Modify SCFv notebook.
ALGW71
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1cef6e3

Commits on Jun 25, 2025

Commits on Jul 1, 2025

TCR cut off implemented and continue statement skips all MHC.
ALGW71
committed
9dd30be

Commits on Jul 2, 2025