tacular-omics
Repositories list
17 repositories
- Python library, API, and MCP server for the UNIMOD mass spectrometry modifications database
- Python library, API, and MCP server for the UniProt PTM controlled vocabulary
- Python reader for Bruker timsTOF (.d) data: DDA/DIA/PRM, fast centroiding and noise filtering
psimodpy
PublicPython library, API, and MCP server for the PSI-MOD protein modification ontology- Fast, lazy mzML reader for Python: typed models, gzip random access, validation, Numpress/zstd decoding
- Parse ProForma 2.1 peptide sequences and calculate masses, fragments, and isotopic distributions in Python.
- Chainable Spectrum API for MS processing: denoising, isotope deconvolution, matching, scoring, plotting
- Python library for reading and writing PEFF (PSI Extended FASTA Format) files. PEFF is a superset of FASTA used in proteomics that carries rich per-entry annota…
tacular-omics
PublicInstall the tacular-omics proteomics packages togethertacular
PublicPython lookups for amino acids, elements, and proteomics PTM ontologies (UNIMOD, PSI-MOD, RESID, XLMOD, GNOme)- Pure-Python library for reading and writing FASTA sequence files with UniProt-style header parsing.
.github
Publicpeff_uniprot_fetcher
PublicGenerate annotated PEFF files from UniProt accessions, taxonomy IDs, or search queries, using pefftacular.tdfextractor
PublicExtract MS/MS spectra from Bruker timsTOF .d folders and convert them to MS2, MGF, or mzML.peff_digest
Publicspectrl
PublicSelf-contained, URL-safe mass spectrum interchange for Python and TypeScript
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