Repositories list

• ribokit.github.io

  Public
  RiboKit GitHub pages

  CSS

  •11 fork in ribokit/ribokit.github.io•11 star in ribokit/ribokit.github.io•00 issues in ribokit/ribokit.github.io•00 pull requests in ribokit/ribokit.github.io•Updated Sep 18, 2026Sep 18, 2026

• Primerize

  Public archive
  Archive of primer design and nucleic acid thermodynamics scripts used by the Das lab at Stanford for high-throughput RNA synthesis and design.

  MATLAB

  •

  MIT License

  •33 forks in ribokit/Primerize•33 stars in ribokit/Primerize•00 issues in ribokit/Primerize•00 pull requests in ribokit/Primerize•Updated May 21, 2026May 21, 2026

• RDATKit

  Public
  RNA Data (RDAT) read/write scripts

  Python

  •

  MIT License

  •55 forks in ribokit/RDATKit•33 stars in ribokit/RDATKit•77 issues in ribokit/RDATKit•22 pull requests in ribokit/RDATKit•Updated May 16, 2026May 16, 2026

• HiTRACE

  Public
  High Throughput Robust Analysis of Capillary Electrophoresis

  MATLAB

  •

  Other

  •33 forks in ribokit/HiTRACE•55 stars in ribokit/HiTRACE•33 issues in ribokit/HiTRACE•11 pull request in ribokit/HiTRACE•Updated Apr 28, 2025Apr 28, 2025

• Biers

  Public
  Basic Inference Engine for RNA Structure

  MATLAB

  •

  MIT License

  •22 forks in ribokit/Biers•11 star in ribokit/Biers•11 issue in ribokit/Biers•11 pull request in ribokit/Biers•Updated Apr 28, 2025Apr 28, 2025

• M2seq

  Public
  Analysis of 2D signal in mutate-and-map sequencing data

  MATLAB

  •

  MIT License

  •22 forks in ribokit/M2seq•22 stars in ribokit/M2seq•00 issues in ribokit/M2seq•00 pull requests in ribokit/M2seq•Updated Apr 28, 2025Apr 28, 2025

• RiboVis

  Public
  Favorite RNA/protein viewing scripts from the Das lab

  Python

  •

  MIT License

  •00 forks in ribokit/RiboVis•11 star in ribokit/RiboVis•00 issues in ribokit/RiboVis•00 pull requests in ribokit/RiboVis•Updated Apr 28, 2025Apr 28, 2025

• RiboDraw

  Public
  Semiautomated layout of RNA tertiary structure diagrams

  Promela

  •

  MIT License

  •88 forks in ribokit/RiboDraw•1717 stars in ribokit/RiboDraw•3131 issues in ribokit/RiboDraw•00 pull requests in ribokit/RiboDraw•Updated Feb 26, 2025Feb 26, 2025

• ribokit-Sphinx-theme

  Public
  GitHub Pages Theme: RiboKit

  CSS

  •11 fork in ribokit/ribokit-Sphinx-theme•11 star in ribokit/ribokit-Sphinx-theme•00 issues in ribokit/ribokit-Sphinx-theme•00 pull requests in ribokit/ribokit-Sphinx-theme•Updated Dec 13, 2024Dec 13, 2024

• MAPseeker

  Public
  Software for analyzing multiplexed SHAPE/DMS experiments (MAP-seq) and multiplexed •OH cleavage analysis (MOHCA-seq).

  C++

  •

  MIT License

  •11 fork in ribokit/MAPseeker•00 stars in ribokit/MAPseeker•00 issues in ribokit/MAPseeker•00 pull requests in ribokit/MAPseeker•Updated Jun 30, 2024Jun 30, 2024

• REEFFIT

  Public
  The RNA Ensemble Extraction From Footprinting Insights Technique

  Python

  •

  Other

  •11 fork in ribokit/REEFFIT•11 star in ribokit/REEFFIT•00 issues in ribokit/REEFFIT•11 pull request in ribokit/REEFFIT•Updated Jan 25, 2020Jan 25, 2020

• LIFFT

  Public
  LIkelihood-based Fits of Folding Transitions

  MATLAB

  •

  MIT License

  •00 forks in ribokit/LIFFT•00 stars in ribokit/LIFFT•00 issues in ribokit/LIFFT•00 pull requests in ribokit/LIFFT•Updated Jan 1, 2020Jan 1, 2020

• SAFA

  Public
  Semi-Automated Footprinting Analysis

  MATLAB

  •

  GNU General Public License v3.0

  •00 forks in ribokit/SAFA•00 stars in ribokit/SAFA•00 issues in ribokit/SAFA•00 pull requests in ribokit/SAFA•Updated Jun 3, 2018Jun 3, 2018

• RiboPaint

  Public
  Color RNA Secondary Structure Diagrams

  MATLAB

  •

  MIT License

  •00 forks in ribokit/RiboPaint•00 stars in ribokit/RiboPaint•00 issues in ribokit/RiboPaint•00 pull requests in ribokit/RiboPaint•Updated Nov 19, 2017Nov 19, 2017

• ribokit-Jekyll-theme

  Public
  GitHub Pages Theme: RiboKit

  CSS

  •11 fork in ribokit/ribokit-Jekyll-theme•00 stars in ribokit/ribokit-Jekyll-theme•00 issues in ribokit/ribokit-Jekyll-theme•00 pull requests in ribokit/ribokit-Jekyll-theme•Updated Jun 23, 2017Jun 23, 2017

• RiboBase-inactive

  Public archive
  Python

  •00 forks in ribokit/RiboBase-inactive•00 stars in ribokit/RiboBase-inactive•00 issues in ribokit/RiboBase-inactive•00 pull requests in ribokit/RiboBase-inactive•Updated Apr 12, 2016Apr 12, 2016