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@GMOD Generic Model Organism Database Project

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    115 repositories

    • Apollo3

      Public
      JBrowse 2 plugin for editing annotations on an Apollo server
      TypeScript
      •
      Apache License 2.0
      •9•15•72•3•Updated Apr 17, 2026Apr 17, 2026

    • jbrowse-plugin-list

      Public
      List of plugins for the JBrowse 2 plugin store.
      JavaScript
      •5•2•1•2•Updated Apr 17, 2026Apr 17, 2026

    • jbrowse-components

      Public
      Source code for JBrowse 2, a modern React-based genome browser
      visualizationbioinformaticsgenomics
      visualizationbioinformaticsgenomicsjbrowse
      TypeScript
      •
      Apache License 2.0
      •81•279•178•8•Updated Apr 16, 2026Apr 16, 2026

    • jb2hubs

      Public
      Source code for the JBrowse 2 genome hubs webite and data processing scripts
      TypeScript
      •0•0•36•0•Updated Apr 16, 2026Apr 16, 2026

    • jbrowse-plugin-mafviewer

      Public
      A viewer for multiple alignment format (MAF) files in JBrowse 2
      TypeScript
      •0•14•12•0•Updated Apr 16, 2026Apr 16, 2026

    • jbrowse-plugin-gwas

      Public
      TypeScript
      •1•6•4•2•Updated Apr 16, 2026Apr 16, 2026

    • jbrowse-plugin-msaview

      Public
      multiple sequence alignment browser plugin for JBrowse 2
      TypeScript
      •
      Apache License 2.0
      •0•6•5•0•Updated Apr 16, 2026Apr 16, 2026

    • jbrowse-plugin-protein3d

      Public
      3D protein structure visualizer in jbrowse 2 - WIP
      TypeScript
      •0•0•6•0•Updated Apr 16, 2026Apr 16, 2026

    • JBrowseMSA

      Public
      A multiple sequence alignment viewer
      JavaScript
      •
      MIT License
      •3•25•24•0•Updated Apr 16, 2026Apr 16, 2026

    • hclust

      Public
      Hierarchical clustering in javascript
      TypeScript
      •0•2•0•0•Updated Apr 11, 2026Apr 11, 2026

    • vcf-js

      Public
      Variant Call Format (VCF) parser
      TypeScript
      •
      MIT License
      •4•26•2•2•Updated Apr 10, 2026Apr 10, 2026

    • bbi-js

      Public
      Parser for bigwig and bigbed files
      TypeScript
      •
      MIT License
      •6•8•3•0•Updated Apr 4, 2026Apr 4, 2026

    • twobit-js

      Public
      Read .2bit files with pure JS. Works in node or webpack.
      TypeScript
      •
      MIT License
      •1•4•0•1•Updated Mar 31, 2026Mar 31, 2026

    • indexedfasta-js

      Public
      Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi
      TypeScript
      •
      MIT License
      •3•12•0•0•Updated Mar 31, 2026Mar 31, 2026

    • nclist-js

      Public
      Read JBrowse v1 nested containment list feature stores from modern JS
      TypeScript
      •
      MIT License
      •0•0•0•1•Updated Mar 31, 2026Mar 31, 2026

    • mobx-state-tree

      Public
      JBrowse fork of mobx-state-tree, based on v5.4.2
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Mar 29, 2026Mar 29, 2026

    • tabix-js

      Public
      Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser
      TypeScript
      •
      MIT License
      •4•14•2•0•Updated Mar 28, 2026Mar 28, 2026

    • ucsc-hub-js

      Public
      read and write UCSC track and assembly hub files in node or the browser
      TypeScript
      •
      MIT License
      •1•5•5•1•Updated Mar 28, 2026Mar 28, 2026

    • trix-js

      Public
      Read UCSC Trix indexes in pure JavaScript
      TypeScript
      •
      Apache License 2.0
      •2•0•0•1•Updated Mar 28, 2026Mar 28, 2026

    • jexl

      Public
      fork of TomFrost/jexl for jbrowse use
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Mar 28, 2026Mar 28, 2026

    • ixixx-js

      Public
      TypeScript
      •
      MIT License
      •2•3•1•0•Updated Mar 28, 2026Mar 28, 2026

    • gff-js

      Public
      parse and format streams of GFF3, for node or webpack
      genomics
      genomics
      TypeScript
      •
      MIT License
      •5•10•0•1•Updated Mar 28, 2026Mar 28, 2026

    • generic-filehandle2

      Public
      modernization of the original generic-filehandle, no Buffer polyfill needed
      TypeScript
      •0•0•0•1•Updated Mar 28, 2026Mar 28, 2026

    • g2p_mapper

      Public
      TypeScript
      •1•0•0•0•Updated Mar 28, 2026Mar 28, 2026

    • faidx-js

      Public
      Index a FASTA file similar to `samtools faidx` using pure js
      TypeScript
      •
      MIT License
      •0•2•0•0•Updated Mar 28, 2026Mar 28, 2026

    • cram-js

      Public
      Read CRAM v3 and v2 in node or in the browser
      genomics
      genomics
      C
      •
      MIT License
      •9•18•9•2•Updated Mar 28, 2026Mar 28, 2026

    • bed-js

      Public
      A parser for the BED format including autoSql support
      TypeScript
      •0•5•1•1•Updated Mar 28, 2026Mar 28, 2026

    • abortable-promise-cache

      Public
      add AbortController support to a cache of async requests
      TypeScript
      •
      MIT License
      •1•6•1•5•Updated Mar 28, 2026Mar 28, 2026

    • bgzf-filehandle

      Public
      Nodejs filehandle for reading bgzip+.gzi compressed files
      TypeScript
      •
      MIT License
      •4•7•4•2•Updated Mar 28, 2026Mar 28, 2026

    • bam-js

      Public
      Parse BAM and BAM index files in javascript for node and the browser
      TypeScript
      •
      MIT License
      •9•25•7•1•Updated Mar 28, 2026Mar 28, 2026
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