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@ClarkLabCode Clark Lab, Yale University

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    24 repositories

    • MitochondrialMorphologyPosition

      Public
      Code for Sager et al. mitochondria paper
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •1•2•0•0•Updated Dec 11, 2025Dec 11, 2025

    • humanAuditoryCorrelations

      Public
      Code for generating stimuli and analyzing data related to human auditory correlation sensitivity
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Oct 3, 2025Oct 3, 2025

    • Gap_Crossing

      Public
      Code for analyzing gap crossing data
      Jupyter Notebook
      •0•0•0•0•Updated Aug 30, 2025Aug 30, 2025

    • TimeReversalSymmetry

      Public
      Code used in paper on broken time reversal symmetry in visual motion detection
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 25, 2025Feb 25, 2025

    • LoomDetectionANN

      Public
      Code to create and train models of loom detection for comparison with data from LPLC2 and other neurons.
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •0•4•0•0•Updated Dec 2, 2024Dec 2, 2024

    • GaitPaperCode

      Public
      MATLAB
      •
      GNU General Public License v3.0
      •2•3•0•0•Updated Oct 23, 2023Oct 23, 2023

    • StarburstAnalysisPub

      Public
      Code used to analyze starburst amacrine cell calcium imaging data
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 2, 2023Aug 2, 2023

    • Mi4Decoder

      Public
      Decodes Mi4 signals to generate a stationarity signal
      Jupyter Notebook
      •0•0•0•0•Updated Jul 10, 2023Jul 10, 2023

    • SelfMotionDetectionML

      Public
      Code for training a small visual ANN to distinguish self rotation from object motion
      Jupyter Notebook
      •0•0•0•0•Updated Feb 13, 2023Feb 13, 2023

    • LobulaClustering

      Public
      Code to cluster lobula input neurons in the hemibrain dataset
      Python
      •0•0•0•0•Updated Sep 9, 2022Sep 9, 2022

    • CollisionSimulation

      Public
      Simulation of isotropic collision trajectories
      MATLAB
      •0•0•0•0•Updated Aug 11, 2022Aug 11, 2022

    • TimingModels

      Public
      MATLAB
      •0•0•0•0•Updated May 3, 2022May 3, 2022

    • LPLC1ConnectomeAnalysis

      Public
      Code for investigating LPLC1 connections in the hemibrain dataset
      Python
      •0•0•0•0•Updated Feb 18, 2022Feb 18, 2022

    • PanoramicStimulus

      Public
      Present visual stimulus on panoramic screens using Matlab Pscyhtoolbox
      MATLAB
      •2•0•0•0•Updated Nov 11, 2021Nov 11, 2021

    • T4T5TrainingCode

      Public
      Code associated with training ANNs to predict natural scene velocities.
      MATLAB
      •0•0•0•0•Updated May 19, 2021May 19, 2021

    • IllusionPaperCode

      Public
      Code used to analyze data and generate model output for Agrochao, Tanaka, et al., 2020
      MATLAB
      •1•0•0•0•Updated May 19, 2020May 19, 2020

    • DDModel

      Public
      Displacement Detector Model for LC11
      MATLAB
      •0•1•0•0•Updated Apr 23, 2020Apr 23, 2020

    • FlyLimbOptoCode

      Public
      C++
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Apr 22, 2020Apr 22, 2020

    • SynapticModel

      Public
      Code for simulations of the minimal synaptic model
      MATLAB
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Feb 10, 2020Feb 10, 2020

    • OpponencyModels

      Public
      Code for the opponency paper
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 24, 2019Nov 24, 2019

    • ThirdOrderKernelCode

      Public
      MATLAB
      •
      MIT License
      •1•0•0•0•Updated Nov 5, 2019Nov 5, 2019

    • FilterResolution

      Public
      Code for filter resolution paper figure.
      MATLAB
      •1•0•0•0•Updated Oct 31, 2019Oct 31, 2019

    • ApparentMotionModelingCode

      Public
      MATLAB
      •0•0•0•0•Updated Jan 22, 2019Jan 22, 2019

    • GPUFilterExtraction

      Public
      C++
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Jan 9, 2017Jan 9, 2017
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