refactor: reorganize the partition module by codepath - #940

Merged

ivan-aksamentov merged 18 commits into

rustfrom

refactor/partition-codepath-layout

Aug 31, 2026

Commits on Aug 31, 2026

refactor(partition): group storage payloads into storage module
ivan-aksamentov
committed
fb36cc9
refactor(partition): group branch-length optimization into optimize module
ivan-aksamentov
committed
6df1a62
refactor(partition): group Fitch parsimony into fitch module
ivan-aksamentov
committed
edba2a4
refactor(partition): isolate Augur JSON export under io module
ivan-aksamentov
committed
6aea360
refactor(partition): split marginal into shared framework and sparse codepath
ivan-aksamentov
committed
725774f
refactor(partition): move dense and discrete marginal into marginal module
ivan-aksamentov
committed
6064e80
refactor(partition): colocate marginal tests with their codepath
ivan-aksamentov
committed
b09bfe6
docs: update partition module layout in crate README
ivan-aksamentov
committed
b59bd0c
refactor: split marginal shared module into data, pass, and normalize submodules
ivan-aksamentov
committed
3f34482
refactor: split marginal discrete module into partition, input, and comment submodules
ivan-aksamentov
committed
91f0e13
refactor: split sparse marginal pass into driver, forward, and backward submodules
ivan-aksamentov
committed
ecccd43
refactor: extract dependency-queue scheduler from indexed_pass
ivan-aksamentov
committed
18dca75
refactor(partition): remove unused non-indexed marginal interface
ivan-aksamentov
committed
5cfce01
test: relocate sparse message tests into the shared sparse __tests__ directory
ivan-aksamentov
committed
293d5ae
refactor(partition): split timetree dispatch enum into dir module
ivan-aksamentov
committed
95afbea
refactor(partition): fold sparse marginal pass drivers into their modules
ivan-aksamentov
committed
d697902
refactor(graph): move indexed pass and dependency queue into treetime-graph
ivan-aksamentov
committed
bc83284
refactor(partition): declare sparse backward and forward pass modules at the sparse root
ivan-aksamentov
committed
b1c07ee

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refactor: reorganize the partition module by codepath - #940

refactor: reorganize the partition module by codepath#940
ivan-aksamentov merged 18 commits into
rustfrom
refactor/partition-codepath-layout

Commits on Aug 31, 2026

refactor(partition): group storage payloads into storage module

refactor(partition): group branch-length optimization into optimize module

refactor(partition): group Fitch parsimony into fitch module

refactor(partition): isolate Augur JSON export under io module

refactor(partition): split marginal into shared framework and sparse codepath

refactor(partition): move dense and discrete marginal into marginal module

refactor(partition): colocate marginal tests with their codepath

docs: update partition module layout in crate README

refactor: split marginal shared module into data, pass, and normalize submodules

refactor: split marginal discrete module into partition, input, and comment submodules

refactor: split sparse marginal pass into driver, forward, and backward submodules

refactor: extract dependency-queue scheduler from indexed_pass

refactor(partition): remove unused non-indexed marginal interface

test: relocate sparse message tests into the shared sparse tests directory

refactor(partition): split timetree dispatch enum into dir module

refactor(partition): fold sparse marginal pass drivers into their modules

refactor(graph): move indexed pass and dependency queue into treetime-graph

refactor(partition): declare sparse backward and forward pass modules at the sparse root