Fixes for documentation issues noted for dmr isoform#621
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SuhasSrinivasan wants to merge 1 commit into
Open
Fixes for documentation issues noted for dmr isoform#621SuhasSrinivasan wants to merge 1 commit into
SuhasSrinivasan wants to merge 1 commit into
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Updated command options for modkit dmr isoform and clarified usage notes. Fix for issue nanoporetech#620
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Pull request overview
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Updates documentation for modkit dmr isoform plotting to clarify required arguments and to better describe plot-only filtering flags.
Changes:
- Clarifies that
--plotrequires a gene specifier (--gene-nameor--gene-id) and cannot be used in whole-transcriptome mode. - Updates the documented max p-value flag name to
--max-pvaland adds guidance on plot-only behavior and mutual exclusivity with--min-score.
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Updated command options for modkit dmr isoform and clarified usage notes. Fix for issue #620