feat: CID-optimal consensus tree search (CIDConsensus)#213

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ms609 wants to merge 35 commits into

feature/cid-consensus

Commits on Mar 26, 2026

Commits on Mar 27, 2026

feat: SPIC scoring for InfoConsensus (T-cid-consensus)
ms609
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Merge remote-tracking branch 'origin/cpp-search' into feature/cid-consensus
ms609
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fix: use ape::consensus (lowercase) in test-Morphy.R — Consensus() imported from TreeTools lacks rooted arg
ms609
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fix: use TreeTools::Consensus() in vignettes (bare Consensus() not on search path without explicit library)
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fix: update InfoConsensus.Rd and SearchControl.Rd to match code
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fix: add Splitwise to WORDLIST (T-150 spell-check fix)
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fix: qualify bare Consensus() as TreeTools::Consensus() in vignettes (T-150)
ms609
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