RNAseq_pipeline

Pipeline to process and analyse RNAseq data.

To download repository including submodules, please use the command:

git clone --recursive https://github.com/lmb-seq/PRAGUI.git

Please don't forget to update submodules everytime you update the repository:

git pull
git submodule update

Create environmental variables in your bashrc file

Add the following lines in your bashrc file

export RNAseq_analysis="[path_to_repository]/RNAseq_analysis.R"
export cummeRbund="[path_to_repository]/exploratory_analysis_cummeRbund.R"