Pedigree phasing with whatshap (issue 387) by tetedange13 · Pull Request #968 · genomic-medicine-sweden/nallo

Update snapshots after whatshap trio phasing
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Update snapshots after whatshap trio phasing (2)
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Update CHANGELOG
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Turn '2 samples' into '3'
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Revert "Turn '2 samples' into '3'"
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Turn '2 samples' into '3'
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Merge dev
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Will update at the end
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Move new param to main
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Always pass ch_pedigree
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Fix new param description
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Prev codeblock position did not work when '--skip_align'
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FIX: 'join mismatch' with empty tuple
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FIX: typo 'param_name' vs 'val_param'
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Update snapshots
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Merge dev
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FIX: prev merge introduced duplicate code
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Forgot to remove commented code
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FIX: Forgotten TODO
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Update whatshap module
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Re-patch whatshap/phase with ped input
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Adapt subwf to new whatshap/phase module
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