bioinfo_repo

All the code used in everyday work

Changelog: 15. 5. 2019 - added mapping pipeline written in Bash

Name		Name	Last commit message	Last commit date
ChIP_seq		ChIP_seq
Perl		Perl
R_scripts		R_scripts
UCSC_hubs		UCSC_hubs
analyses/smallRNA_clusters		analyses/smallRNA_clusters
bam_manipulations		bam_manipulations
bisulfite_sequencing		bisulfite_sequencing
blast_blat		blast_blat
differential_expression		differential_expression
download_genome_annotation		download_genome_annotation
download_raw_data		download_raw_data
fastq_manipulations		fastq_manipulations
genome_assembly		genome_assembly
install		install
map_to_genome		map_to_genome
nextflow_pipelines/rnaseq_analysis		nextflow_pipelines/rnaseq_analysis
other_scripts		other_scripts
papers		papers
phylogeny		phylogeny
repeatMasker		repeatMasker
transcriptome_assembly		transcriptome_assembly
variant_calling/RNA-seq		variant_calling/RNA-seq
.gitignore		.gitignore
03.backup_scripts_with_dir_tree.sh		03.backup_scripts_with_dir_tree.sh
README.md		README.md
useful_functions.sh		useful_functions.sh

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