bump existing SPH-EXA easyconfigs to v0.96.2 by pescobar · Pull Request #25606 · easybuilders/easybuild-easyconfigs

pescobar · 2026-03-25T08:26:55Z

edit: follow-up to:

github-actions · 2026-03-25T08:27:23Z

Updated software `SPH-EXA-0.96.2-foss-2023b-CUDA-12.4.0.eb`

Diff against SPH-EXA-0.96.1-foss-2025b-CUDA-12.9.1.eb

easybuild/easyconfigs/s/SPH-EXA/SPH-EXA-0.96.1-foss-2025b-CUDA-12.9.1.eb

diff --git a/easybuild/easyconfigs/s/SPH-EXA/SPH-EXA-0.96.1-foss-2025b-CUDA-12.9.1.eb b/easybuild/easyconfigs/s/SPH-EXA/SPH-EXA-0.96.2-foss-2023b-CUDA-12.4.0.eb
index 08c6c5e672..139574fbbc 100644
--- a/easybuild/easyconfigs/s/SPH-EXA/SPH-EXA-0.96.1-foss-2025b-CUDA-12.9.1.eb
+++ b/easybuild/easyconfigs/s/SPH-EXA/SPH-EXA-0.96.2-foss-2023b-CUDA-12.4.0.eb
@@ -6,29 +6,29 @@
 easyblock = 'CMakeMake'
 
 name = 'SPH-EXA'
-version = '0.96.1'
+version = '0.96.2'
 versionsuffix = '-CUDA-%(cudaver)s'
 
 homepage = 'https://github.com/sphexa-org/sphexa'
 description = """ SPH-EXA is a C++20 simulation code for hydrodynamics simulations
 (with gravity and other physics), parallelized with MPI, OpenMP, CUDA, and HIP."""
 
-toolchain = {'name': 'foss', 'version': '2025b'}
+toolchain = {'name': 'foss', 'version': '2023b'}
 toolchainopts = {'usempi': True}
 
 source_urls = ['https://github.com/sphexa-org/sphexa/archive/refs/tags/']
 sources = ['v%(version)s.tar.gz']
-checksums = ['3b7bf2c2b24d5d00e1eb66d74820888a87a38e017272d2c5977c4aa82f16368e']
+checksums = ['2ff6edb422eadf47634f98d20258458c82374efe617de0d0c3d5bb3d7945be23']
 
 builddependencies = [
-    ('CMake', '4.0.3'),
+    ('CMake', '3.27.6'),
 ]
 
 dependencies = [
-    ('HDF5', '1.14.6'),
-    ('CUDA', '12.9.1', '', SYSTEM),
-    ('UCX-CUDA', '1.19.0', versionsuffix),
-    ('UCC-CUDA', '1.4.4', versionsuffix),
+    ('HDF5', '1.14.3'),
+    ('CUDA', '12.4.0', '', SYSTEM),
+    ('UCX-CUDA', '1.15.0', versionsuffix),
+    ('UCC-CUDA', '1.2.0', versionsuffix),
 ]
 
 cuda_compute_capabilities = ['8.0', '8.6', '8.9', '9.0']

Diff against SPH-EXA-0.96.1-foss-2023b-CUDA-12.4.0.eb

easybuild/easyconfigs/s/SPH-EXA/SPH-EXA-0.96.1-foss-2023b-CUDA-12.4.0.eb

diff --git a/easybuild/easyconfigs/s/SPH-EXA/SPH-EXA-0.96.1-foss-2023b-CUDA-12.4.0.eb b/easybuild/easyconfigs/s/SPH-EXA/SPH-EXA-0.96.2-foss-2023b-CUDA-12.4.0.eb
index 3c284fee21..139574fbbc 100644
--- a/easybuild/easyconfigs/s/SPH-EXA/SPH-EXA-0.96.1-foss-2023b-CUDA-12.4.0.eb
+++ b/easybuild/easyconfigs/s/SPH-EXA/SPH-EXA-0.96.2-foss-2023b-CUDA-12.4.0.eb
@@ -6,7 +6,7 @@
 easyblock = 'CMakeMake'
 
 name = 'SPH-EXA'
-version = '0.96.1'
+version = '0.96.2'
 versionsuffix = '-CUDA-%(cudaver)s'
 
 homepage = 'https://github.com/sphexa-org/sphexa'
@@ -18,7 +18,7 @@ toolchainopts = {'usempi': True}
 
 source_urls = ['https://github.com/sphexa-org/sphexa/archive/refs/tags/']
 sources = ['v%(version)s.tar.gz']
-checksums = ['3b7bf2c2b24d5d00e1eb66d74820888a87a38e017272d2c5977c4aa82f16368e']
+checksums = ['2ff6edb422eadf47634f98d20258458c82374efe617de0d0c3d5bb3d7945be23']
 
 builddependencies = [
     ('CMake', '3.27.6'),

Updated software `SPH-EXA-0.96.2-foss-2025b-CUDA-12.9.1.eb`

Diff against SPH-EXA-0.96.1-foss-2025b-CUDA-12.9.1.eb

easybuild/easyconfigs/s/SPH-EXA/SPH-EXA-0.96.1-foss-2025b-CUDA-12.9.1.eb

diff --git a/easybuild/easyconfigs/s/SPH-EXA/SPH-EXA-0.96.1-foss-2025b-CUDA-12.9.1.eb b/easybuild/easyconfigs/s/SPH-EXA/SPH-EXA-0.96.2-foss-2025b-CUDA-12.9.1.eb
index 08c6c5e672..0aeaf80db2 100644
--- a/easybuild/easyconfigs/s/SPH-EXA/SPH-EXA-0.96.1-foss-2025b-CUDA-12.9.1.eb
+++ b/easybuild/easyconfigs/s/SPH-EXA/SPH-EXA-0.96.2-foss-2025b-CUDA-12.9.1.eb
@@ -6,7 +6,7 @@
 easyblock = 'CMakeMake'
 
 name = 'SPH-EXA'
-version = '0.96.1'
+version = '0.96.2'
 versionsuffix = '-CUDA-%(cudaver)s'
 
 homepage = 'https://github.com/sphexa-org/sphexa'
@@ -18,7 +18,7 @@ toolchainopts = {'usempi': True}
 
 source_urls = ['https://github.com/sphexa-org/sphexa/archive/refs/tags/']
 sources = ['v%(version)s.tar.gz']
-checksums = ['3b7bf2c2b24d5d00e1eb66d74820888a87a38e017272d2c5977c4aa82f16368e']
+checksums = ['2ff6edb422eadf47634f98d20258458c82374efe617de0d0c3d5bb3d7945be23']
 
 builddependencies = [
     ('CMake', '4.0.3'),

Diff against SPH-EXA-0.96.1-foss-2023b-CUDA-12.4.0.eb

easybuild/easyconfigs/s/SPH-EXA/SPH-EXA-0.96.1-foss-2023b-CUDA-12.4.0.eb

diff --git a/easybuild/easyconfigs/s/SPH-EXA/SPH-EXA-0.96.1-foss-2023b-CUDA-12.4.0.eb b/easybuild/easyconfigs/s/SPH-EXA/SPH-EXA-0.96.2-foss-2025b-CUDA-12.9.1.eb
index 3c284fee21..0aeaf80db2 100644
--- a/easybuild/easyconfigs/s/SPH-EXA/SPH-EXA-0.96.1-foss-2023b-CUDA-12.4.0.eb
+++ b/easybuild/easyconfigs/s/SPH-EXA/SPH-EXA-0.96.2-foss-2025b-CUDA-12.9.1.eb
@@ -6,29 +6,29 @@
 easyblock = 'CMakeMake'
 
 name = 'SPH-EXA'
-version = '0.96.1'
+version = '0.96.2'
 versionsuffix = '-CUDA-%(cudaver)s'
 
 homepage = 'https://github.com/sphexa-org/sphexa'
 description = """ SPH-EXA is a C++20 simulation code for hydrodynamics simulations
 (with gravity and other physics), parallelized with MPI, OpenMP, CUDA, and HIP."""
 
-toolchain = {'name': 'foss', 'version': '2023b'}
+toolchain = {'name': 'foss', 'version': '2025b'}
 toolchainopts = {'usempi': True}
 
 source_urls = ['https://github.com/sphexa-org/sphexa/archive/refs/tags/']
 sources = ['v%(version)s.tar.gz']
-checksums = ['3b7bf2c2b24d5d00e1eb66d74820888a87a38e017272d2c5977c4aa82f16368e']
+checksums = ['2ff6edb422eadf47634f98d20258458c82374efe617de0d0c3d5bb3d7945be23']
 
 builddependencies = [
-    ('CMake', '3.27.6'),
+    ('CMake', '4.0.3'),
 ]
 
 dependencies = [
-    ('HDF5', '1.14.3'),
-    ('CUDA', '12.4.0', '', SYSTEM),
-    ('UCX-CUDA', '1.15.0', versionsuffix),
-    ('UCC-CUDA', '1.2.0', versionsuffix),
+    ('HDF5', '1.14.6'),
+    ('CUDA', '12.9.1', '', SYSTEM),
+    ('UCX-CUDA', '1.19.0', versionsuffix),
+    ('UCC-CUDA', '1.4.4', versionsuffix),
 ]
 
 cuda_compute_capabilities = ['8.0', '8.6', '8.9', '9.0']

ocaisa · 2026-03-25T08:44:54Z

The previous versions were only merged last week and are not in an EB release, let's remove those as part of this PR so we just retain the latest version?

pescobar · 2026-03-25T08:54:51Z

@ocaisa I have removed previous release as suggested

ocaisa

LGTM these original versions were only merged last week so safe to replace

ocaisa · 2026-03-25T10:33:32Z

@boegelbot please test @ jsc-zen3-a100

boegelbot · 2026-03-25T10:40:08Z

@ocaisa: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=25606 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_25606 --ntasks=8 --partition=jsczen3g --gres=gpu:1 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 10085

Test results coming soon (I hope)...

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Message to humans: this is just bookkeeping information for me,
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pescobar · 2026-03-25T13:22:22Z

@ocaisa is this one ok?

I will update the EESSI PRs as soon as this one gets merged

ocaisa · 2026-03-25T14:06:05Z

Just waiting on the bot to report back, I guess build jobs are backed up

boegel

lgtm

boegel · 2026-03-25T14:34:32Z

Just waiting on the bot to report back, I guess build jobs are backed up

That's going to take a while, the only GPU node we have in jsc-zen3 is chewing on PyTorch 2.9.1, see #24365 (comment)

I'll submit a test report from our GPU cluster so this can be merged...

pescobar · 2026-03-25T14:37:34Z

I'll submit a test report from our GPU cluster so this can be merged...

Thank you!

boegel · 2026-03-25T16:58:53Z

Test report by @boegel
FAILED
Build succeeded for 0 out of 2 (total: 7 mins 40 secs) (2 easyconfigs in total)
node3900.accelgor.os - Linux RHEL 9.6, x86_64, AMD EPYC 7413 24-Core Processor (zen3), 1 x NVIDIA NVIDIA A100-SXM4-80GB, 590.48.01, Python 3.9.21
See https://gist.github.com/boegel/f9627cd096ba558c3d959cf58b8f21d7 for a full test report.

boegel · 2026-03-25T17:08:53Z

@pescobar

cannot find -lhdf5-static: No such file or directory

am I missing something?

pescobar · 2026-03-26T08:05:19Z

@boegel I didn't try a local build because I was busy and I assumed such a small upgrade won't break anything but I guess I was wrong

I will debug it locally and reply here as soon as I get rid of my boring meetings

boegelbot · 2026-03-26T11:27:53Z

Test report by @boegelbot
FAILED
Build succeeded for 1 out of 2 (total: 23 mins 33 secs) (2 easyconfigs in total)
jsczen3g1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.7, x86_64, AMD EPYC-Milan Processor (zen3), 1 x NVIDIA NVIDIA A100 80GB PCIe, 590.48.01, Python 3.9.25
See https://gist.github.com/boegelbot/4b78fd1c1694559c2687d9d3581429d5 for a full test report.

ocaisa · 2026-03-26T11:28:45Z

Seems the dependency H5hut is missing (and built on the fly by CMake): https://github.com/sphexa-org/sphexa/blob/6a1b00e8d115e542318f598d7e9dfcdc34fcab79/cmake/Fetch_H5hut.cmake

pescobar · 2026-03-26T14:06:56Z

I could reproduce the build error locally and I have reported it in sphexa-org/sphexa#587

ocaisa · 2026-04-08T14:24:09Z

We've had to patch for that issue in the past

easybuild-easyconfigs/easybuild/easyconfigs/g/GATB-Core/GATB-Core-1.4.2_no-thirdparty-boost-hdf5.patch

Lines 10 to 11 in 43dc7ee

    
           -set (gatb-core-libraries   gatbcore-static  dl  pthread  z hdf5-static ${gatb-core-extra-libraries}) 
        
           +set (gatb-core-libraries   gatbcore-static  dl  pthread  z hdf5 ${gatb-core-extra-libraries})

I wonder are they (or the h5hut dependency they pull in) vendoring hdf5?

ocaisa

Let's see if we can just disable using static libraries

Co-authored-by: ocaisa <alan.ocais@cecam.org>

ocaisa · 2026-04-08T14:38:33Z

@boegelbot please test @ jsc-zen3-a100

boegelbot · 2026-04-08T14:40:10Z

@ocaisa: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=25606 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_25606 --ntasks=8 --partition=jsczen3g --gres=gpu:1 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 10174

Test results coming soon (I hope)...

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2026-04-08T15:04:55Z

Test report by @boegelbot
FAILED
Build succeeded for 1 out of 2 (total: 24 mins 4 secs) (2 easyconfigs in total)
jsczen3g1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.7, x86_64, AMD EPYC-Milan Processor (zen3), 1 x NVIDIA NVIDIA A100 80GB PCIe, 590.48.01, Python 3.9.25
See https://gist.github.com/boegelbot/cae3657b771291b30699f0915f7383f3 for a full test report.

ocaisa · 2026-04-08T15:04:58Z

Ah, it was only the 2023b build that failed. In that case, I think CMake is the guilty party: https://github.com/Kitware/CMake/blob/v3.27.6/Modules/FindHDF5.cmake#L532-L536

ocaisa · 2026-04-08T15:22:48Z

Hmm, this looks like a smoking gun: H5hut/H5hut#5

ocaisa · 2026-04-08T15:24:33Z

That might actually be the fix that is needed: sphexa-org/sphexa#588

ocaisa · 2026-04-08T15:27:56Z

Ok, I found it. They are pulling in a branch at build time for their h5hut dependency https://github.com/eth-cscs/h5hut/commits/cmake/ , this should be (at least) pinned to a commit

ocaisa · 2026-04-08T15:50:16Z

@pescobar you need a patch to pin https://github.com/sphexa-org/sphexa/blob/develop/CMakeLists.txt#L87 to a commit (probably best is eth-cscs/h5hut@74cd84c)

ocaisa · 2026-04-08T15:53:46Z

The other option is to disable h5hut altogether -DSPH_EXA_WITH_H5HUT=OFF.

Co-authored-by: ocaisa <alan.ocais@cecam.org>

ocaisa · 2026-04-08T15:54:59Z

@boegelbot please test @ jsc-zen3-a100

boegelbot · 2026-04-08T16:00:13Z

@ocaisa: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=25606 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_25606 --ntasks=8 --partition=jsczen3g --gres=gpu:1 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 10178

Test results coming soon (I hope)...

Details

- notification for comment with ID 4207607569 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2026-04-08T16:36:44Z

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (total: 36 mins 12 secs) (2 easyconfigs in total)
jsczen3g1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.7, x86_64, AMD EPYC-Milan Processor (zen3), 1 x NVIDIA NVIDIA A100 80GB PCIe, 590.48.01, Python 3.9.25
See https://gist.github.com/boegelbot/9af785bded7ca1143e6b833f478488fe for a full test report.

ocaisa

I don't like having easyconfigs in the release that we know are now broken. I'm going to merge this as is and @pescobar can follow up after with a PR that adds a specific commit for h5hut and re-enables support for that

pescobar · 2026-04-08T17:42:45Z

@ocaisa thanks for finding where the problem is, I was expecting a fix from the developers and I didn't look at it

I have managed to build the application with cmake -DH5hut_VERSION=git.30ff892 .. to point to commit eth-cscs/h5hut@30ff892 which is the one right before the commit breaking the build eth-cscs/h5hut@0269c70

I am going to create a new PR with the working easyconfig

pescobar · 2026-04-08T17:55:41Z

@ocaisa I have created a new PR #25693

Let me know if you want any change

Add latest release SPH-EXA

6bd4ddc

github-actions Bot added 2023b 2025b issues & PRs related to 2025b common toolchains update labels Mar 25, 2026

pescobar mentioned this pull request Mar 25, 2026

{2025.06}[foss/2025b] SPH-EXA-0.96.2 CUDA-12.9.1 EESSI/software-layer#1453

Merged

remove previous sph-exa release. We only keep latest one

137c59f

github-actions Bot added change and removed update labels Mar 25, 2026

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boegel changed the title ~~Add latest release SPH-EXA~~ bump existing SPH-EXA easyconfigs to v0.96.2 Mar 25, 2026

boegel previously approved these changes Mar 25, 2026

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boegel added this to the next release (5.2.2?) milestone Mar 25, 2026

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Co-authored-by: ocaisa <alan.ocais@cecam.org>

ocaisa dismissed stale reviews from boegel and themself via 7e0ccbe April 8, 2026 14:38

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Co-authored-by: ocaisa <alan.ocais@cecam.org>

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ocaisa merged commit 236b292 into easybuilders:develop Apr 8, 2026
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Updated software SPH-EXA-0.96.2-foss-2023b-CUDA-12.4.0.eb

Updated software SPH-EXA-0.96.2-foss-2025b-CUDA-12.9.1.eb

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pescobar commented Mar 25, 2026 •

edited by boegel

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Updated software `SPH-EXA-0.96.2-foss-2023b-CUDA-12.4.0.eb`

Updated software `SPH-EXA-0.96.2-foss-2025b-CUDA-12.9.1.eb`

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