WIP: refgenie1 migration (do not merge) - #327

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nsheff wants to merge 10 commits into

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Commits on May 4, 2026

pepatac: remove dead refgenconf import; add audit + findings
nsheff
committed
6ac7af0
pepatac: migrate sample pipeline interface to refgenie1 populator
nsheff
committed
e3229bd
pepatac: replace refgenconf with refgenie 1.0.0
nsheff
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6e075e7
pepatac: update docs for refgenie 1.0 syntax
nsheff
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505873f
findings: add validation-discovered API/CLI/pip gaps
nsheff
committed
333e4d0
validation: end-to-end run notes + final findings
nsheff
committed
bf8ceaa

Commits on May 18, 2026