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VarLens

VarLens

Genetic variant analysis — on your desktop or self-hosted.

Build License: MIT Electron Vue

Documentation · Download

VarLens variant table view

Features

  • Import annotated variant data from JSON files (single, batch, or ZIP)
  • Filter by gene, consequence, population frequency, pathogenicity scores, and more
  • Annotate variants with stars, comments, tags, and ACMG classifications
  • Classify with ACMG criteria and auto-suggested evidence
  • Analyze cohorts with carrier aggregation and gene burden testing
  • Match phenotypes using HPO-based similarity scoring
  • Export filtered results to Excel or CSV
  • Store data locally in SQLite with optional encryption

For a complete walkthrough, see the feature documentation.

Install

Download the latest release for your platform:

Platform Formats
Windows Installer / Portable
macOS (Apple Silicon only) DMG / ZIP
Linux AppImage / DEB

See the installation guide for system requirements and first-launch steps.

Development

Requires Node.js 24.14.1+ and npm 11.11.0+. On Windows, also install Visual Studio Build Tools with the C++ workload.

npm install
make dev
Command Description
make dev Start development server with hot reload
make lint Lint and auto-fix
make typecheck TypeScript type checking
make test Run unit tests
make ci Lint + format check + typecheck + rebuild for Node + test
make dist Build and package for current platform

Tech Stack

Vue 3 and Vuetify 4 (renderer), Electron 40 with electron-vite (build), SQLite via better-sqlite3-multiple-ciphers (storage), Pinia (state), Vitest and Playwright (testing), GitHub Actions (CI/CD).

License

MIT

About

Your lens into genetic variants — offline desktop app for genetic variant analysis

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