Implement Annotation config types

.github/workflows/openvariant_tester.yml

@@ -40,16 +40,20 @@ jobs:
       uses: actions-rust-lang/setup-rust-toolchain@v1
 
     - uses: astral-sh/setup-uv@v4
-      
+
     - name: Lint with Ruff
       run: |
         uv sync --extra linting --frozen --no-install-project
         uv run ruff check openvariant
 
-    - name: Test
+    - name: Test Python-based code
       run: |
         uv sync --extra tests --frozen
-        uv run pytest --cov . 
+        uv run pytest --cov .
+
+    - name: Test Rust-based code
+      run: |
+        make test
 
     - name: Upload coverage reports to Codecov with GitHub Action
       uses: codecov/codecov-action@v3

Cargo.toml

@@ -9,4 +9,6 @@ crate-type = ["cdylib"]
 
 [dependencies]
 pyo3 = { version = "0.28.3", features = ["extension-module"] }
+serde = { version = "1.0.228", features = ["derive"] }
 thiserror = "2"
+yaml_serde = "0.10.4"

Makefile

@@ -7,10 +7,16 @@ release:
 test:
 	PYO3_PYTHON=$$(uv python find) cargo test
 
+fmt:
+	PYO3_PYTHON=$$(uv python find) cargo fmt
+
 lint:
-	PYO3_PYTHON=$$(uv python find) cargo clippy
+	PYO3_PYTHON=$$(uv python find) cargo clippy -- -D warnings
 
-format:
-	PYO3_PYTHON=$$(uv python find) cargo fmt --check
+fix:
+	PYO3_PYTHON=$$(uv python find) cargo clippy --fix --allow-dirty --allow-staged
+	PYO3_PYTHON=$$(uv python find) cargo fmt
 
-check: lint format
+check:
+	PYO3_PYTHON=$$(uv python find) cargo fmt --check
+	PYO3_PYTHON=$$(uv python find) cargo clippy -- -D warnings