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gatk-swe
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align
align
 
 
apply_bed_filter
apply_bed_filter
 
 
bin
bin
 
 
bqsr
bqsr
 
 
combine
combine
 
 
combine_vcf
combine_vcf
 
 
freebayes
freebayes
 
 
gatk-hc
gatk-hc
 
 
gatk-ug
gatk-ug
 
 
glia
glia
 
 
platypus
platypus
 
 
split_chr
split_chr
 
 
split_fastq
split_fastq
 
 
vqsr
vqsr
 
 
.gitignore
.gitignore
 
 
GATK-pdf.pdf
GATK-pdf.pdf
 
 
GenomeAnalysisTKLite.jar
GenomeAnalysisTKLite.jar
 
 
HG00096.lowcov.settings
HG00096.lowcov.settings
 
 
LICENSE
LICENSE
 
 
MarkDuplicates.jar
MarkDuplicates.jar
 
 
README.md
README.md
 
 
bin.tar.gz
bin.tar.gz
 
 
download_reference.sh
download_reference.sh
 
 
exome.settings
exome.settings
 
 
general_settings.sh
general_settings.sh
 
 
install_dependencies.sh
install_dependencies.sh
 
 
pipeline.sh
pipeline.sh
 
 
pre_script.sh
pre_script.sh
 
 
snyderome.settings
snyderome.settings
 
 
swe
swe
 
 

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gatk-swe

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