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fix standardization import examples #428

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fix standardization import examples #428

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10 changes: 7 additions & 3 deletions new_pages/data_used.qmd
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Original file line number Diff line number Diff line change
Expand Up @@ -232,13 +232,15 @@ See the page on [Standardised rates](standardization.qmd). You can load the data

```{r, eval=F}
# install/load the rio package
pacman::p_load(rio)
pacman::p_load(rio, tidyverse)

##############
# Country A
##############
# import demographics for country A directly from Github
A_demo <- import("https://github.com/appliedepi/epirhandbook_eng/raw/master/data/standardization/country_demographics.csv")
A_demo <- import("https://github.com/appliedepi/epirhandbook_eng/raw/master/data/standardization/country_demographics.csv") %>%
mutate(Country = "A") %>%
select(Country, everything())

# import deaths for country A directly from Github
A_deaths <- import("https://github.com/appliedepi/epirhandbook_eng/raw/master/data/standardization/deaths_countryA.csv")
Expand All @@ -247,7 +249,9 @@ A_deaths <- import("https://github.com/appliedepi/epirhandbook_eng/raw/master/da
# Country B
##############
# import demographics for country B directly from Github
B_demo <- import("https://github.com/appliedepi/epirhandbook_eng/raw/master/data/standardization/country_demographics_2.csv")
B_demo <- import("https://github.com/appliedepi/epirhandbook_eng/raw/master/data/standardization/country_demographics_2.csv", format = ";") %>%
mutate(Country = "B") %>%
select(Country, everything())

# import deaths for country B directly from Github
B_deaths <- import("https://github.com/appliedepi/epirhandbook_eng/raw/master/data/standardization/deaths_countryB.csv")
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8 changes: 6 additions & 2 deletions new_pages/standardization.qmd
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Original file line number Diff line number Diff line change
Expand Up @@ -79,13 +79,17 @@ See the [Download handbook and data](data_used.qmd) page for instructions on how

```{r, eval=F}
# import demographics for country A directly from Github
A_demo <- import("https://github.com/appliedepi/epirhandbook_eng/raw/master/data/standardization/country_demographics.csv")
A_demo <- import("https://github.com/appliedepi/epirhandbook_eng/raw/master/data/standardization/country_demographics.csv") %>%
mutate(Country = "A") %>%
select(Country, everything())

# import deaths for country A directly from Github
A_deaths <- import("https://github.com/appliedepi/epirhandbook_eng/raw/master/data/standardization/deaths_countryA.csv")

# import demographics for country B directly from Github
B_demo <- import("https://github.com/appliedepi/epirhandbook_eng/raw/master/data/standardization/country_demographics_2.csv")
B_demo <- import("https://github.com/appliedepi/epirhandbook_eng/raw/master/data/standardization/country_demographics_2.csv", format = ";") %>%
mutate(Country = "B") %>%
select(Country, everything())

# import deaths for country B directly from Github
B_deaths <- import("https://github.com/appliedepi/epirhandbook_eng/raw/master/data/standardization/deaths_countryB.csv")
Expand Down