enable ruff checks; resolve ruff errors

[rstijerina]

Overview

Enables ruff code checks, and resolves existing issues. Ran poetry run ruff check --fix.

Ruff has a ruleset to enforce PEP guidelines as well as some organizational standards like import sorting (isort) which is what is changed in this PR. Replaces Flake8.

Does not include any functional changes.

[codecov]

Codecov Report

❌ Patch coverage is 78.30189% with 138 lines in your changes missing coverage. Please review.
✅ Project coverage is 56.50%. Comparing base (f094322) to head (790e81c).

Files with missing lines	Patch %	Lines
server/portal/apps/accounts/models.py	6.66%	14 Missing ⚠️
...erver/portal/apps/googledrive_integration/views.py	42.85%	8 Missing ⚠️
server/portal/libs/agave/models/permissions.py	0.00%	7 Missing ⚠️
...s/projects/management/commands/migrate-projects.py	0.00%	6 Missing ⚠️
...l/apps/projects/management/commands/projects_id.py	0.00%	6 Missing ⚠️
...workspace_operations/shared_workspace_migration.py	0.00%	6 Missing ⚠️
server/portal/apps/users/utils.py	60.00%	6 Missing ⚠️
server/portal/libs/agave/models/applications.py	0.00%	6 Missing ⚠️
server/portal/apps/projects/managers/base.py	50.00%	5 Missing ⚠️
.../apps/workspace/management/commands/import_apps.py	0.00%	5 Missing ⚠️
... and 41 more

Additional details and impacted files

@@                            Coverage Diff                            @@
##           task/WP-1256--format-server-side-code    #1360      +/-   ##
=========================================================================
- Coverage                                  56.53%   56.50%   -0.03%     
=========================================================================
  Files                                        534      534              
  Lines                                      17153    17143      -10     
  Branches                                    3496     3494       -2     
=========================================================================
- Hits                                        9697     9687      -10     
- Misses                                      6906     6907       +1     
+ Partials                                     550      549       -1     

Flag	Coverage Δ
javascript	58.59% <ø> (ø)
unittests	54.36% <78.30%> (-0.06%)	⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines	Coverage Δ
server/portal/apps/accounts/api/urls.py	100.00% <ø> (ø)
server/portal/apps/accounts/api/views/systems.py	29.62% <100.00%> (ø)
server/portal/apps/accounts/managers/abstract.py	85.71% <ø> (ø)
server/portal/apps/accounts/managers/accounts.py	82.05% <ø> (ø)
...er/portal/apps/accounts/migrations/0001_initial.py	100.00% <100.00%> (ø)
.../accounts/migrations/0002_hostkeys_keys_sshkeys.py	100.00% <100.00%> (ø)
server/portal/apps/accounts/urls.py	100.00% <100.00%> (ø)
server/portal/apps/auth/api/urls.py	100.00% <100.00%> (ø)
server/portal/apps/auth/api/views.py	100.00% <100.00%> (ø)
server/portal/apps/auth/backends.py	91.66% <100.00%> (ø)
... and 172 more

🚀 New features to boost your workflow:

• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.
• 📦 JS Bundle Analysis: Save yourself from yourself by tracking and limiting bundle sizes in JS merges.

[sophia-massie]

Just to test everything is working, I pushed keys to Expanse, Vista, and Bridges. Ran app on bridges. Can login/logout. Ran ruff checks. LGTM!

[edmondsgarrett]

LGTM