Bump the all-julia-packages group across 1 directory with 2 updates

[dependabot]

Updates the requirements on SciMLBase and RecursiveArrayTools to permit the latest version.
Updates SciMLBase to 3.0.0

Release notes

Sourced from SciMLBase's releases.

v3.0.0

SciMLBase v3.0.0

Diff since v2.154.0

SciMLBase v3.0.0 — Breaking Release

RecursiveArrayTools v4: Solution types are now AbstractArrays (#1297)

Most impactful change. AbstractVectorOfArray (and thus ODESolution, DDESolution, RODESolution, DAESolution) now subtypes AbstractArray:

• sol[i] returns the ith scalar element (column-major), not the ith timestep. Use sol.u[i] or sol[:, i] for timesteps.
• length(sol) returns total elements (prod(size(sol))). Use length(sol.u) for number of timesteps.
• iterate(sol) iterates scalar elements. Use sol.u for timestep iteration.
• map(f, sol) maps over elements. Use map(f, sol.u) for timesteps.

Ensemble RNG redesign (#1252)

• prob_func(prob, i, repeat) → prob_func(prob, ctx) where ctx::EnsembleContext
• output_func(sol, i) → output_func(sol, ctx)
• EnsembleContext includes sim_id, repeat, rng, sim_seed, worker_id, master_rng
• New seed/rng/rng_func kwargs on solve() for deterministic, thread-count-independent ensemble solves

Removed deprecated APIs

• u_modified! renamed to derivative_discontinuity! (#1289)
• Removed deprecated.jl: old type aliases (DEAlgorithm, DEProblem, DESolution, etc.), constructors, deprecated accessors (#1291)
• Removed backward compat shims in remake.jl and MLStyle extension (#1292)
• Removed old iterators: tuples, intervals, TimeChoiceIterator (#1290)

Simplified getproperty

• Removed redundant getproperty overloads on solution abstract types (#1293)
• Removed deprecated getproperty aliases (.destats, .x, .lb/.ub, .minimizer, .minimum) (#1294)

Other breaking changes

• Replaced Moshi with plain Julia structs for Clocks — 23% precompilation improvement (#1295)
• ODEFunction uses DEFAULT_SPECIALIZATION (AutoSpecialize) for convenience constructors (#1300)
• Propagate interp/dense to DiffEqArrays from solution callables (#1297)
• is_discrete_time_domain(nothing) now returns false (#1306)

Migration Guide

Old (v2)	New (v3)
sol[i] (timestep)	sol.u[i] or sol[:, i]
length(sol) (timesteps)	length(sol.u)
for u in sol	for u in sol.u
u_modified!(integrator, true)	derivative_discontinuity!(integrator, true)
prob_func(prob, i, repeat)	prob_func(prob, ctx) — use ctx.sim_id, ctx.repeat
output_func(sol, i)	output_func(sol, ctx)
sol.destats	sol.stats

... (truncated)

Commits

• 014e294 Document v3.0 breaking changes and migration guide
• 83ba080 Update Project.toml
• 6aadd3b Merge pull request #1310 from ChrisRackauckas-Claude/remove-redundant-zygote-...
• a3d3838 Remove redundant Zygote integer-indexing adjoints for ODESolution
• 70ff4b8 Merge pull request #1304 from SciML/v3
• 9790e8e Merge pull request #1252 from isaacsas/ensemble_rng_redesign
• e833b03 Merge pull request #1309 from SciML/as/fix-ci
• c5a1764 Remove backwards-compatible 5-arg solve_batch shims for DiffEqGPU
• e0a6dd0 Merge origin/v3 into ensemble_rng_redesign
• 2da04cb test: disable SDDE tests
• Additional commits viewable in compare view

Updates RecursiveArrayTools to 4.0.1

Release notes

Sourced from RecursiveArrayTools's releases.

v4.0.1

RecursiveArrayTools v4.0.1

Diff since v3.51.0

Merged pull requests:

• BREAKING: Make AbstractVectorOfArray <: AbstractArray (#547) (@​ChrisRackauckas-Claude)
• Add MIT LICENSE.md to sublibraries for registration (#554) (@​ChrisRackauckas-Claude)
• Update FastBroadcast extension to Serial dispatch (v3 backport) (#556) (@​ChrisRackauckas-Claude)
• Update FastBroadcast extension to Serial dispatch (#557) (@​ChrisRackauckas-Claude)
• Update Project.toml (#558) (@​ChrisRackauckas)

Commits

• 8030a81 Merge pull request #558 from SciML/ChrisRackauckas-patch-3
• a7ae44b Update Project.toml
• c480117 Merge pull request #557 from ChrisRackauckas-Claude/fix-fb-serial
• d1ca597 Update FastBroadcast extension to use Serial dispatch
• 5ae3f87 Merge pull request #554 from ChrisRackauckas-Claude/add-licenses
• b77f17f Add MIT LICENSE.md to sublibraries for registration
• fc9c29a Merge pull request #547 from ChrisRackauckas-Claude/abstractarray-breaking-up...
• f0dfd27 Merge branch 'master' into abstractarray-breaking-update
• 484d3af Run Runic formatting
• 4e28332 Fix GPU ArrayPartition any/all: load AnyAll subpackage in GPU tests
• Additional commits viewable in compare view

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Superseded by #3417.