eigen 5.0.0

Aliases/eigen@5

@@ -0,0 +1 @@
+../Formula/e/eigen.rb

Formula/a/alpscore.rb

@@ -1,9 +1,10 @@
 class Alpscore < Formula
   desc "Applications and libraries for physics simulations"
   homepage "https://alpscore.org"
   url "https://github.com/ALPSCore/ALPSCore/archive/refs/tags/v2.3.2.tar.gz"
   sha256 "bd9b5af0a33acc825ffedfaa0bf794a420ab2b9b50f6a4e634ecbde43ae9cc24"
   license "GPL-2.0-only"
+  revision 1
 
   bottle do
     rebuild 1
@@ -29,9 +30,14 @@
 
   # Apply open PR to support Eigen 5.0.0
   # PR ref: https://github.com/ALPSCore/ALPSCore/pull/651
+  # PR ref: https://github.com/ALPSCore/ALPSCore/pull/656
   patch do
-    url "https://github.com/ALPSCore/ALPSCore/commit/0a7952abb3570e48d04d435d7d9d16ecbd06fb2a.patch?full_index=1"
-    sha256 "f007f65367528149ce5c4ad871aea600bbe05dd374c100588d577a07e3a05818"
+    url "https://github.com/ALPSCore/ALPSCore/commit/b2e21ce65b323196f04490c362694f0c30f8cdde.patch?full_index=1"
+    sha256 "8f237373e7a945126e5a1b88d8707ea2d67a263369134d6302205646f35af4e5"
+  end
+  patch do
+    url "https://github.com/ALPSCore/ALPSCore/commit/98a707d2bef2520df1fccfaf132c94ca7c909bb6.patch?full_index=1"
+    sha256 "ad13d526ccbc7f7c90c1bf2895e7bc0143ad8630729d616d391e86d04ffaecd9"
   end
 
   def install

Formula/c/ceres-solver.rb

@@ -1,12 +1,22 @@
 class CeresSolver < Formula
   desc "C++ library for large-scale optimization"
   homepage "http://ceres-solver.org/"
-  url "http://ceres-solver.org/ceres-solver-2.2.0.tar.gz"
-  sha256 "48b2302a7986ece172898477c3bcd6deb8fb5cf19b3327bc49969aad4cede82d"
   license "BSD-3-Clause"
-  revision 2
+  revision 3
   head "https://ceres-solver.googlesource.com/ceres-solver.git", branch: "master"
 
+  stable do
+    url "http://ceres-solver.org/ceres-solver-2.2.0.tar.gz"
+    sha256 "48b2302a7986ece172898477c3bcd6deb8fb5cf19b3327bc49969aad4cede82d"
+
+    # Backport support for eigen 5.0.0
+    patch :DATA # https://github.com/ceres-solver/ceres-solver/commit/f0720aeb84ec7bb479fe3618b30fa54981baf8fd
+    patch do
+      url "https://github.com/ceres-solver/ceres-solver/commit/f9b7b6651b108136a16df44d91fb31735645f5a7.patch?full_index=1"
+      sha256 "019006cc850b19b442e108118c599c98b18af8eb06ab37c22e6698c55d55a512"
+    end
+  end
+
   livecheck do
     url "http://ceres-solver.org/installation.html"
     regex(/href=.*?ceres-solver[._-]v?(\d+(?:\.\d+)+)\.t/i)
@@ -58,3 +68,28 @@
     assert_match "CONVERGENCE", shell_output("./build/helloworld")
   end
 end
+
+__END__
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index f53e9981b..af932c6a7 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -234,17 +234,9 @@ unset(CERES_COMPILE_OPTIONS)
+
+ # Eigen.
+ # Eigen delivers Eigen3Config.cmake since v3.3.3
+-find_package(Eigen3 3.3 REQUIRED)
++find_package(Eigen3 3.3.4 REQUIRED NO_MODULE)
+ if (Eigen3_FOUND)
+   message("-- Found Eigen version ${Eigen3_VERSION}: ${Eigen3_DIR}")
+-  if (CMAKE_SYSTEM_PROCESSOR MATCHES "^(aarch64.*|AARCH64.*)" AND
+-      Eigen3_VERSION VERSION_LESS 3.3.4)
+-    # As per issue #289: https://github.com/ceres-solver/ceres-solver/issues/289
+-    # the bundle_adjustment_test will fail for Eigen < 3.3.4 on aarch64.
+-    message(FATAL_ERROR "-- Ceres requires Eigen version >= 3.3.4 on aarch64. "
+-      "Detected version of Eigen is: ${Eigen3_VERSION}.")
+-  endif()
+-
+   if (EIGENSPARSE)
+     message("-- Enabling use of Eigen as a sparse linear algebra library.")
+     list(APPEND CERES_COMPILE_OPTIONS CERES_USE_EIGEN_SPARSE)

Formula/e/eigen.rb

@@ -1,15 +1,13 @@
 class Eigen < Formula
   desc "C++ template library for linear algebra"
   homepage "https://gitlab.com/libeigen/eigen"
-  # TODO: remove LGPL from licenses in 5.0.0
-  url "https://gitlab.com/libeigen/eigen/-/archive/3.4.1/eigen-3.4.1.tar.gz"
-  sha256 "b93c667d1b69265cdb4d9f30ec21f8facbbe8b307cf34c0b9942834c6d4fdbe2"
+  url "https://gitlab.com/libeigen/eigen/-/archive/5.0.0/eigen-5.0.0.tar.gz"
+  sha256 "315c881e19e17542a7d428c5aa37d113c89b9500d350c433797b730cd449c056"
   license all_of: [
     "MPL-2.0",
     "Apache-2.0",   # BFloat16.h
     "BSD-3-Clause", # bindings to BLAS, LAPACKe and MKL
     "Minpack",      # LevenbergMarquardt
-    "LGPL-2.1-only", # IterativeSolvers, removed in 5.0.0
   ]
   head "https://gitlab.com/libeigen/eigen.git", branch: "master"
 
@@ -32,6 +30,7 @@
       -DEIGEN_BUILD_BLAS=OFF
       -DEIGEN_BUILD_LAPACK=OFF
     ]
+    args << "-DEIGEN_PRERELEASE_VERSION=" if build.stable?
 
     system "cmake", "-S", ".", "-B", "build", *args, *std_cmake_args
     system "cmake", "--install", "build"
@@ -52,7 +51,7 @@
         std::cout << m << std::endl;
       }
     CPP
-    system ENV.cxx, "test.cpp", "-I#{include}/eigen3", "-o", "test"
+    system ENV.cxx, "-std=c++14", "test.cpp", "-I#{include}/eigen3", "-o", "test"
     assert_equal %w[3 -1 2.5 1.5], shell_output("./test").split
   end
 end

Formula/e/eigenpy.rb

@@ -1,11 +1,28 @@
 class Eigenpy < Formula
   desc "Python bindings of Eigen library with Numpy support"
   homepage "https://github.com/stack-of-tasks/eigenpy"
-  url "https://github.com/stack-of-tasks/eigenpy/releases/download/v3.12.0/eigenpy-3.12.0.tar.gz"
-  sha256 "e6b7f17e1b7fb61e52447ceee8f47c3fc2c8f9cc4d19317e0467dc71babdb350"
   license "BSD-2-Clause"
-  revision 2
-  head "https://github.com/stack-of-tasks/eigenpy.git", branch: "master"
+  revision 3
+  head "https://github.com/stack-of-tasks/eigenpy.git", branch: "devel"
+
+  stable do
+    url "https://github.com/stack-of-tasks/eigenpy/releases/download/v3.12.0/eigenpy-3.12.0.tar.gz"
+    sha256 "e6b7f17e1b7fb61e52447ceee8f47c3fc2c8f9cc4d19317e0467dc71babdb350"
+
+    # Backport support for eigen 5.0.0
+    patch do
+      url "https://github.com/stack-of-tasks/eigenpy/commit/0bb71c7da9c297a334f2de419df13ba2c7a67312.patch?full_index=1"
+      sha256 "812274fc7fa68e3af3ede5324590aa2e7ae06f264ac1927989dfe6e324374791"
+    end
+    patch do
+      url "https://github.com/stack-of-tasks/eigenpy/commit/a64334c3ddbdd9ffd9f3b65a0b9c1e0d1d2b8c96.patch?full_index=1"
+      sha256 "2110114b6467e5e2889ea55b9e3b2ef5f8cc965a914bfd62d2335e526551d421"
+    end
+    patch do
+      url "https://github.com/stack-of-tasks/eigenpy/commit/2a4adb8af92eebd1dac321010db040797100b91d.patch?full_index=1"
+      sha256 "ef47a99123a391c6d3a7be683d5667b3d2f94562d1b4a6c8284c8acc1928b4c2"
+    end
+  end
 
   bottle do
     sha256 cellar: :any,                 arm64_tahoe:   "5dba4558782405576b2cb6764135000d9a4cad5cf38e500a4a1f3f8dd612063c"

Formula/f/fcl.rb

@@ -1,12 +1,38 @@
 class Fcl < Formula
   desc "Flexible Collision Library"
   homepage "https://flexible-collision-library.github.io/"
-  url "https://github.com/flexible-collision-library/fcl/archive/refs/tags/0.7.0.tar.gz"
-  sha256 "90409e940b24045987506a6b239424a4222e2daf648c86dd146cbcb692ebdcbc"
   license "BSD-3-Clause"
-  revision 1
+  revision 2
   head "https://github.com/flexible-collision-library/fcl.git", branch: "master"
 
+  stable do
+    url "https://github.com/flexible-collision-library/fcl/archive/refs/tags/0.7.0.tar.gz"
+    sha256 "90409e940b24045987506a6b239424a4222e2daf648c86dd146cbcb692ebdcbc"
+
+    # Backport C++ standard changes
+    patch do
+      url "https://github.com/flexible-collision-library/fcl/commit/1257b4183e0ae4890294b0edea780605c2533cfd.patch?full_index=1"
+      sha256 "d3bb6bc82e926d4a89c19064f79b11506fa9899d52c46a482e3f9b41785b1291"
+    end
+
+    # Backport commits to apply subsequent patch
+    patch do
+      url "https://github.com/flexible-collision-library/fcl/commit/beffa1bb54da6686e8167843e051a3f9a2bad6f7.patch?full_index=1"
+      sha256 "ab2058f7316e8ad6e9caa253e94c6f8dcad633ae02473d6353b9003552909525"
+    end
+    patch do
+      url "https://github.com/flexible-collision-library/fcl/commit/3c2b993a0b1a10f888a53cce4f3c73035ab862c3.patch?full_index=1"
+      sha256 "a483773630e9f28c59ace7edacb0a782c9b6a1830514b92e1465ce4828e1111d"
+    end
+
+    # Apply open PR to add cassert includes needed for eigen 5.0.0
+    # PR ref: https://github.com/flexible-collision-library/fcl/pull/649
+    patch do
+      url "https://github.com/flexible-collision-library/fcl/commit/75ad2bc55acefb6c5638ed2730827530b4b7a176.patch?full_index=1"
+      sha256 "6265c1178fe237313e107ae19386d7fc5d69638213d705290ddb61aea0b0fda2"
+    end
+  end
+
   no_autobump! because: :requires_manual_review
 
   bottle do
@@ -29,7 +55,7 @@ class Fcl < Formula
   depends_on "octomap"
 
   def install
-    system "cmake", "-S", ".", "-B", "build", *std_cmake_args
+    system "cmake", "-S", ".", "-B", "build", "-DCMAKE_CXX_STANDARD=14", *std_cmake_args
     system "cmake", "--build", "build"
     system "cmake", "--install", "build"
   end
@@ -44,7 +70,7 @@ def install
       }
     CPP
 
-    system ENV.cxx, "test.cpp", "-std=c++11", "-I#{include}",
+    system ENV.cxx, "test.cpp", "-std=c++14", "-I#{include}",
                     "-I#{Formula["eigen"].include}/eigen3",
                     "-L#{lib}", "-lfcl", "-o", "test"
     system "./test"

Formula/g/g2o.rb

@@ -5,6 +5,7 @@ class G2o < Formula
   version "20241228"
   sha256 "d691ead69184ebbb8256c9cd9f4121d1a880b169370efc0554dd31a64802a452"
   license "BSD-2-Clause"
+  revision 1
 
   livecheck do
     url :stable
@@ -25,6 +26,16 @@ class G2o < Formula
   depends_on "cmake" => :build
   depends_on "eigen"
 
+  # Backport support for eigen 5.0.0
+  patch do
+    url "https://github.com/RainerKuemmerle/g2o/commit/5ad2b3d8b550bad67242d90115f28c5b725da2a1.patch?full_index=1"
+    sha256 "f2c0139a045b0ef7380d56d368d1ee0cbd11feeff2dede9858d6a8532a7103bb"
+  end
+  patch do
+    url "https://github.com/RainerKuemmerle/g2o/commit/ef80e643adeb700536dd282dd4316c90cfc05fe8.patch?full_index=1"
+    sha256 "ac9abf38a4425fd95ceb4a295160bec5a2f2bbd2bb2f8695951ba9e0c101edc4"
+  end
+
   def install
     cmake_args = std_cmake_args + %w[-DG2O_BUILD_EXAMPLES=OFF]
     # For Intel: manually set desired SSE features to enable support for older machines.

Formula/i/ifopt.rb

@@ -4,6 +4,7 @@ class Ifopt < Formula
   url "https://github.com/ethz-adrl/ifopt/archive/refs/tags/2.1.4.tar.gz"
   sha256 "da38f91a282f3ed305db163954c37d999b6e95f5d2c913a63bae3fef9ffb3a37"
   license "BSD-3-Clause"
+  revision 1
 
   bottle do
     sha256 cellar: :any,                 arm64_tahoe:   "5bf0d19327f812c4fafdd5bf01874b2d4a3699dc194d9e1d57cfe7936b8b6020"
@@ -21,6 +22,13 @@ class Ifopt < Formula
   depends_on "eigen"
   depends_on "ipopt"
 
+  # Apply open PR to support eigen 5.0.0
+  # PR ref: https://github.com/ethz-adrl/ifopt/pull/110
+  patch do
+    url "https://github.com/ethz-adrl/ifopt/commit/deb3209d5e34cdaa896c7432f6ee1138148ddfda.patch?full_index=1"
+    sha256 "95e1ee352d1842811b2e015a78be304bfce0af867f8233f7e5e7e94aa01aae2d"
+  end
+
   def install
     system "cmake", "-S", ".", "-B", "build", "-DCMAKE_POLICY_VERSION_MINIMUM=3.5", *std_cmake_args
     system "cmake", "--build", "build"
@@ -30,7 +38,7 @@ def install
 
   test do
     cp pkgshare/"test/ex_test_ipopt.cc", "test.cpp"
-    system ENV.cxx, "-std=c++11", "test.cpp", "-o", "test",
+    system ENV.cxx, "-std=c++14", "test.cpp", "-o", "test",
                     "-I#{Formula["eigen"].opt_include}/eigen3",
                     "-L#{lib}", "-lifopt_core", "-lifopt_ipopt"
     assert_match "Optimal Solution Found", shell_output("./test")

Formula/l/lbfgspp.rb

@@ -4,6 +4,7 @@ class Lbfgspp < Formula
   url "https://github.com/yixuan/LBFGSpp/archive/refs/tags/v0.4.0.tar.gz"
   sha256 "39c4aaebd8b94ccdc98191d51913a31cddd618cc0869d99f07a4b6da83ca6254"
   license "MIT"
+  revision 1
   head "https://github.com/yixuan/LBFGSpp.git", branch: "master"
 
   no_autobump! because: :requires_manual_review
@@ -15,6 +16,13 @@ class Lbfgspp < Formula
   depends_on "cmake" => :build
   depends_on "eigen"
 
+  # Apply open PR to support eigen 5.0.0
+  # PR ref: https://github.com/yixuan/LBFGSpp/pull/48
+  patch do
+    url "https://github.com/yixuan/LBFGSpp/commit/b7c91e57a7e5319b4f168ab5e381e92e95236694.patch?full_index=1"
+    sha256 "fbd364dae7afe1ae36b344a82425e42d4702f60da7e17e6789d289c03e0bef5e"
+  end
+
   def install
     system "cmake", "-S", ".", "-B", "build", *std_cmake_args
     system "cmake", "--build", "build"
@@ -62,7 +70,7 @@ class Rosenbrock {
           return 0;
       }
     CPP
-    system ENV.cxx, testpath/"test.cpp", "-std=c++11",
+    system ENV.cxx, testpath/"test.cpp", "-std=c++14",
            "-I#{include}", "-I#{Formula["eigen"].opt_include}/eigen3",
            "-o", "test"
     assert_equal "1 1 1 1 1 1 1 1 1 1", shell_output(testpath/"test").chomp

Formula/o/open-babel.rb

@@ -2,7 +2,7 @@ class OpenBabel < Formula
   desc "Chemical toolbox"
   homepage "https://github.com/openbabel/openbabel"
   license "GPL-2.0-only"
-  revision 2
+  revision 3
   head "https://github.com/openbabel/openbabel.git", branch: "master"
 
   stable do
@@ -64,6 +64,13 @@ def install
     args << "-DCMAKE_POLICY_VERSION_MINIMUM=3.5"
     inreplace "CMakeLists.txt", "cmake_policy(SET CMP0042 OLD)",
                                 "cmake_policy(SET CMP0042 NEW)"
+
+    # Workaround to build with eigen 5.0.0
+    # Issue ref: https://github.com/openbabel/openbabel/issues/2839
+    args += %W[-DEIGEN3_FOUND=ON -DEIGEN3_INCLUDE_DIR=#{Formula["eigen"].opt_include}/eigen3]
+    inreplace "CMakeLists.txt", "set (CMAKE_CXX_STANDARD 11)", "set (CMAKE_CXX_STANDARD 14)"
+    rm "cmake/modules/FindEigen3.cmake"
+
     system "cmake", "-S", ".", "-B", "build", *args, *std_cmake_args
     system "cmake", "--build", "build"
     system "cmake", "--install", "build"

Formula/o/opencv.rb

@@ -1,8 +1,8 @@
 class Opencv < Formula
   desc "Open source computer vision library"
   homepage "https://opencv.org/"
   license "Apache-2.0"
-  revision 13
+  revision 14
 
   stable do
     url "https://github.com/opencv/opencv/archive/refs/tags/4.12.0.tar.gz"
@@ -22,6 +22,12 @@
       url "https://github.com/opencv/opencv/commit/90c444abd387ffa70b2e72a34922903a2f0f4f5a.patch?full_index=1"
       sha256 "5b662eea7b5de1dac3e06895c711955c9d1515d1202191b68594f4f9cfa23242"
     end
+
+    # Backport support for eigen 5.0.0
+    patch do
+      url "https://github.com/opencv/opencv/commit/468de9b36740b3355f0d5cd8be2ce28b340df120.patch?full_index=1"
+      sha256 "b86ca3cf644a49ab7219348db2bc78497235df75ceef714d46fc80e9e80f2a06"
+    end
   end
 
   livecheck do

Formula/o/orocos-kdl.rb

@@ -4,6 +4,7 @@ class OrocosKdl < Formula
   url "https://github.com/orocos/orocos_kinematics_dynamics/archive/refs/tags/1.5.3.tar.gz"
   sha256 "3895eed1b51a6803c79e7ac4acd6a2243d621b887ac26a1a6b82a86a1131c3b6"
   license "LGPL-2.1-or-later"
+  revision 1
 
   bottle do
     sha256 cellar: :any,                 arm64_tahoe:   "63bd25562899d50286d71174337878609041305d72923eee5eee59110ed8a688"
@@ -18,8 +19,8 @@ class OrocosKdl < Formula
   depends_on "eigen"
 
   def install
-    ENV.cxx11
     system "cmake", "-S", "orocos_kdl", "-B", "build",
+                    "-DCMAKE_CXX_STANDARD=14",
                     "-DEIGEN3_INCLUDE_DIR=#{Formula["eigen"].opt_include}/eigen3",
                     *std_cmake_args
     system "cmake", "--build", "build"
@@ -39,7 +40,7 @@ def install
       }
     CPP
 
-    system ENV.cxx, "test.cpp", "-std=c++11", "-I#{include}", "-L#{lib}", "-lorocos-kdl",
+    system ENV.cxx, "test.cpp", "-std=c++14", "-I#{include}", "-L#{lib}", "-lorocos-kdl",
                     "-o", "test"
     system "./test"
   end

Formula/p/pagmo.rb

@@ -4,7 +4,7 @@ class Pagmo < Formula
   url "https://github.com/esa/pagmo2/archive/refs/tags/v2.19.1.tar.gz"
   sha256 "ecc180e669fa6bbece959429ac7d92439e89e1fd1c523aa72b11b6c82e414a1d"
   license any_of: ["LGPL-3.0-or-later", "GPL-3.0-or-later"]
-  revision 5
+  revision 6
 
   bottle do
     sha256 cellar: :any,                 arm64_tahoe:   "970141f824a1df8a43acb58e2d7f833d07b6fc783805fbeb691dafc8611c2f4d"
@@ -23,6 +23,16 @@ class Pagmo < Formula
   depends_on "nlopt"
   depends_on "tbb"
 
+  # Backport support for eigen 5.0.0
+  patch do
+    url "https://github.com/esa/pagmo2/commit/bdd8559d7663536c3a5f56b013f07da11a35c9b8.patch?full_index=1"
+    sha256 "f8679d6ca0d4bd5d9b44382da35ddc6f80404d389813ce05f050d00f5ce3706c"
+  end
+  patch do
+    url "https://github.com/esa/pagmo2/commit/d0e70403179769c326f2694673473e1d3ef0bec7.patch?full_index=1"
+    sha256 "6dcf5ac2cbd8e9b0de20845a51ef5d8eeb0ffd0472f32bcc833ce3f314718f0b"
+  end
+
   def install
     args = %w[
       -DPAGMO_WITH_EIGEN3=ON