Fix extraction graph normalization and provider install#1997
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This was referenced Jul 18, 2026
Rewrite the --no-cluster path in both extract and watch to use build_from_json and node_link_data instead of raw dedup, so the unclustered graph passes the diagnostic integrity gate. Also update documentation (AGENTS.md, README, --help text) to describe the normalized output and add the endpoint-safe graph regression test.
JSON data files are intentionally skipped by the structural extractor. They should not trigger the zero-node aggregate warning, which was designed for failed code extractions (Graphify-Labs#1666).
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This is slice 3/5 of the work previously gathered in #1787. It is independent of the Nix/ACP series.
Fixes OpenCode plugin registration, normalizes the no-cluster graph through endpoint reconciliation, and suppresses the zero-node warning for intentionally skipped JSON data files.
Validation:
tests/test_install.py,tests/test_watch.py,tests/test_extract.py, andtests/test_detect.pyThis can be reviewed or merged independently of the stacked Nix slices.