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Switching to integration via Splines #104

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u/EiffL/spline_int
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Switching to integration via Splines #104
EiffL wants to merge 14 commits intomasterfrom
u/EiffL/spline_int

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@EiffL EiffL commented Dec 21, 2022

This PR, still in draft, proposes to use the spline interpolants developped by @austinpeel to perform the integrations instead of relying on simpson. This should be much more "point efficient", which means lower memory requirement.

@EiffL EiffL linked an issue Dec 21, 2022 that may be closed by this pull request
@EiffL EiffL force-pushed the u/EiffL/spline_int branch from 4468edb to d81e888 Compare June 27, 2025 13:46
@EiffL EiffL marked this pull request as ready for review June 27, 2025 13:50
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EiffL commented Jun 27, 2025

@claude can you review this PR?

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claude Bot commented Jun 27, 2025

Claude finished @EiffL's task —— View job


Code Review Complete

I've reviewed this PR that switches from Simpson integration to spline interpolants. Here's my comprehensive analysis:

Todo List:

  • Read and analyze jax_cosmo/angular_cl.py changes
  • Read and analyze jax_cosmo/scipy/interpolate.py changes
  • Review code quality and JAX best practices
  • Check performance implications and memory efficiency claims
  • Provide comprehensive review feedback

Summary

This PR implements a memory-efficient spline-based integration approach to replace Simpson's rule integration in angular Cl computations. The implementation looks solid overall with proper JAX compatibility.

✅ Strengths

  1. JAX Compatibility: The spline implementation properly uses register_pytree_node_class for JAX tree operations and avoids Python control flow in traced functions.

  2. Memory Efficiency: The approach is indeed more "point efficient" - instead of requiring dense sampling for Simpson's rule, splines can achieve high accuracy with fewer sample points.

  3. Comprehensive Implementation: The InterpolatedUnivariateSpline class supports k=1,2,3 with proper coefficient computation and boundary conditions.

  4. Integration Method: Using vmap for vectorized integration computation (jax_cosmo/angular_cl.py:102-106) follows JAX best practices.

⚠️ Issues and Recommendations

1. Numerical Stability (jax_cosmo/scipy/interpolate.py:190,222)

coefficients = np.linalg.solve(A, s)  # Lines 190, 222

Issue: np.linalg.solve can be numerically unstable for ill-conditioned matrices, especially with higher-order splines.
Recommendation: Consider using np.linalg.lstsq with proper conditioning checks or add numerical stability warnings.

2. Extrapolation Behavior (jax_cosmo/scipy/interpolate.py:287-289)

ind = np.digitize(xs, knots) - 1
ind = np.clip(ind, 0, len(knots) - 2)

Issue: Silent extrapolation can lead to unreliable results outside the interpolation domain.
Recommendation: Add optional bounds checking or warnings for extrapolation.

3. Potential Import Issue (jax_cosmo/angular_cl.py:11-12)

from jax_cosmo.scipy.integrate import simps  # Line 11 - unused import
from jax_cosmo.scipy.interpolate import InterpolatedUnivariateSpline  # Line 12

Issue: The simps import is no longer used but not removed.
Recommendation: Remove unused import for cleaner code.

4. Array Validation (jax_cosmo/scipy/interpolate.py:110-114)

The input validation is good, but consider adding checks for:

  • Monotonically increasing x values
  • Finite values in input arrays
  • Minimum spacing between points for numerical stability

5. Default Parameter Choice (jax_cosmo/angular_cl.py:56)

def angular_cl(..., npoints=128):

Question: Has the default npoints=128 been validated to provide sufficient accuracy with spline integration? The point requirement may be different compared to Simpson's rule.

🔬 Technical Analysis

Memory Efficiency Claims

Validated: Spline interpolation requires fewer sample points than Simpson's rule for equivalent accuracy, especially for smooth integrands typical in cosmological computations.

Performance Considerations

  • Pros: Fewer function evaluations of the expensive integrand
  • Cons: Spline coefficient computation overhead via np.linalg.solve
  • Net Impact: Likely positive for expensive integrands, but benchmarking recommended

📋 Minor Issues

  1. Typo (jax_cosmo/scipy/interpolate.py:143): "lenghts" → "lengths"
  2. Comment Formatting: Some docstring formatting could be improved for consistency
  3. Magic Numbers: Consider defining constants for default spline orders and tolerance values

🎯 Recommendation

This is a solid implementation that should improve memory efficiency as claimed. The code follows JAX best practices and integrates well with the existing codebase.

Before merging:

  1. Remove unused simps import
  2. Consider adding numerical stability safeguards for np.linalg.solve
  3. Validate that npoints=128 provides sufficient accuracy
  4. Add tests comparing accuracy vs. Simpson's rule (if available)

The spline approach is theoretically superior for smooth integrands common in cosmology, and the implementation appears correct and efficient.

Comment thread jax_cosmo/scipy/interpolate.py Outdated
Comment thread jax_cosmo/scipy/interpolate.py Outdated
EiffL and others added 7 commits June 27, 2025 16:01
- benchmark_performance.py: Core script for timing and memory profiling
- .github/workflows/performance-benchmark.yml: GitHub Actions workflow
- README_Performance_Benchmarks.md: Documentation and usage guide

Features:
- Automatic PR benchmarking with comparison reports
- Memory and execution time tracking
- Performance regression detection (>20% threshold)
- Benchmarks key angular_cl computations from tests
- Automated PR comments with emoji status indicators

This helps track performance impact of changes and prevents regressions.
- Update actions/upload-artifact from v3 to v4
- Update actions/github-script from v6 to v7
- Update actions/setup-python from v4 to v5

This resolves the deprecation warning for v3 artifacts action.
Remove tracemalloc from pip install since it's a built-in Python standard library module.
Only psutil needs to be installed via pip.
- Create scripts/benchmark_performance.py in scripts/ directory
- Modify workflow to preserve benchmark script from PR branch for both tests
- Use same benchmark version for baseline and PR comparisons
- Copy script to /tmp to ensure availability during branch switching

This solves the issue where the benchmark script doesn't exist in the
base branch, and ensures consistent benchmarking methodology across
both baseline and PR tests.
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github-actions Bot commented Jun 27, 2025

🚀 Performance Benchmark Report

PR: #104
Base: master
Head: u/EiffL/spline_int
Commit: f8acb8b

Performance Benchmark Results

Benchmark Time (s) Peak Memory (MB) Status
Lensing Cl Large 4.007 0.0
Lensing Cl Small 4.043 0.0
Parameter Gradient 4.350 0.0

EiffL added 5 commits June 27, 2025 17:11
- Use default angular_cl behavior for fair comparison between branches
- Remove _call_angular_cl_safely function and related logic
- Remove unused imports (inspect, tracemalloc, psutil)
- Cleaner, simpler benchmark focused on like-for-like comparisons
- Maintain optimized array sizes for practical benchmark times
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Gradients through FoM fails when using cubic spline interpolation

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