v0.106.6

Oceananigans v0.106.6

Diff since v0.106.5

This release has been identified as a backport.
Automated changelogs for backports tend to be wildly incorrect.
Therefore, the list of issues and pull requests is hidden.

v0.106.5

Oceananigans v0.106.5

Diff since v0.106.4

This release has been identified as a backport.
Automated changelogs for backports tend to be wildly incorrect.
Therefore, the list of issues and pull requests is hidden.

v0.106.4

Oceananigans v0.106.4

Diff since v0.106.3

Merged pull requests:

• Switch biases to be enums rather than distinct types. (#5318) (@jackdfranklin)
• Add a hydrostatic barotropic soliton case validation for hydrostatic open boundaries (#5387) (@tomchor)
• Reorganize Reactant test groups and add CI coverage (#5423) (@glwagner)
• Streamline benchmarking pipeline (#5429) (@simone-silvestri)
• Automated dependency checking (#5432) (@jackdfranklin)
• Distributed should account for z-only fields (#5434) (@dkytezab)
• Skip fill_corners! when no corner neighbors exist (#5435) (@glwagner)
• Fix NSYS kernel charts and add kernel comparison to summary (#5440) (@simone-silvestri)
• Fix publish-benchmarks pipeline token permissions (#5448) (@simone-silvestri)
• Revert "Switch biases to be enums rather than distinct types. (#5318)" (#5449) (@wsmoses)
• [CI] Run sharding tests under earlyoom (#5453) (@giordano)
• Bump codecov/codecov-action from 5 to 6 (#5455) (@dependabot[bot])
• Clear ambiguities in conditional_length (#5456) (@simone-silvestri)
• Replace PR benchmark polling with Buildkite dispatch (#5457) (@simone-silvestri)
• Remove duplicate turbulence closure test from GitHub Actions (#5460) (@tomchor)
• Update number of ambiguities (#5462) (@giordano)
• Fill small documentation gaps (Units, SphericalCoriolis, background_closure_fluxes, PiecewiseLinearMask) (#5463) (@tomchor)
• Add BulkDrag boundary conditions documentation (#5464) (@tomchor)
• Remove dependency on CUDA_Runtime_jll in test/ environment (#5466) (@giordano)
• Add "performance dashboard" to README (#5467) (@simone-silvestri)
• (0.106.4) Move NetCDF output attribute methods from extension to Models module (#5469) (@simone-silvestri)

Closed issues:

• Collect benchmark results and host them on a website (#4851)
• Benchmarking script depends on downstream packages (#5418)

v0.106.3

Oceananigans v0.106.3

Diff since v0.106.2

Merged pull requests:

• Partial cell conservation (#5356) (@simone-silvestri)
• Add flow over hill validation using open boundaries and a hydrostatic model with implicit surface (#5359) (@tomchor)
• Remove initialization_update_state! and clean up initialization (#5420) (@glwagner)
• Fix typo in Simulation tips docs (#5425) (@glwagner)
• Relieve memory in unit tests (#5428) (@simone-silvestri)
• Fix formatting and citation errors in index.md (#5430) (@navidcy)
• Bump minor version from 0.106.2 to 0.106.3 (#5431) (@simone-silvestri)

v0.106.2

Oceananigans v0.106.2

Diff since v0.106.1

Merged pull requests:

• (0.106.2) Refactor coriolis and add Triad scheme (#5383) (@simone-silvestri)
• Shift the RightFaceFolded fold upwards by one row (#5408) (@simone-silvestri)
• Extend TabulatedFunction to support 4D and 5D interpolation (#5417) (@glwagner)

v0.106.1

Oceananigans v0.106.1

Diff since v0.106.0

Merged pull requests:

• Add restart verification script (#5379) (@ewquon)
• Reinvoke sharding tests and refactor Clock constructor for sharded grids (#5389) (@glwagner)
• Improve serial tripolar grid fold tests (#5405) (@briochemc)
• Temporarily drop Benchmark section from Docs + delete legacy_benchmarks (#5412) (@briochemc)
• Fix issue downstream in Reactant on 1.12 (#5415) (@dkytezab)
• Reinstate Docs/Benchmarks (#5419) (@navidcy)
• Small improvements to the benchmarking pipeline (#5421) (@giordano)

v0.106.0

Oceananigans v0.106.0

Diff since v0.105.4

Breaking changes

• #5355 changed the default file when restoring from a checkpointer.

Merged pull requests:

• Add benchmarking package with earth_ocean case (#5317) (@glwagner)
• Rework support for reduction operations on Metal GPU to avoid materialization of the interior (#5329) (@alesok)
• (0.106) Log checkpoint file and mtime when restoring simulations (#5355) (@taimoorsohail)
• (0.105.5) Fix initialize_closure_fields!() use with DynamicSmagorinsky (#5366) (@tomchor)
• Fix section rendering that includes greek LaTeX characters in the documentation (#5380) (@navidcy)
• Bump julia-actions/cache from 2 to 3 (#5382) (@dependabot[bot])
• Propose fix some typos (#5385) (@jeis4wpi)
• Reduce number of ambiguities (#5390) (@giordano)
• Explicit imports in Grids (#5391) (@giordano)
• Load XESFM after Oceananigans (#5393) (@giordano)
• Add new paper reference to Oceananigans documentation (#5395) (@navidcy)
• Fix formatting of reference list in index.md (#5397) (@navidcy)
• Fix typo with density perturbation in docs (#5398) (@navidcy)
• Fix the reference list in the Langmuir example (#5400) (@navidcy)
• (0.105.5) Add unit test for zero momentum flux at immersed peripheral nodes (#5402) (@tomchor)
• Implement ReactantCore.materialize_traced_array for Field (#5409) (@Pangoraw)
• Revise citation for De Abreu and Timmermans (#5411) (@navidcy)
• Remove Oceananigans compact from Project.toml in benchmarks (#5414) (@simone-silvestri)

Closed issues:

• Lagrangian-averaged DynamicSmagorinsky producing zero values for eddy viscosity (again) (#5365)
• Some incorrect formatting in the docs (#5377)
• Langmuir example includes all reference list from the Docs (#5399)
• T_forcing and S_forcing do not receive the expected values (#5407)

v0.105.5

Oceananigans v0.105.5

Diff since v0.105.4

This release has been identified as a backport.
Automated changelogs for backports tend to be wildly incorrect.
Therefore, the list of issues and pull requests is hidden.

v0.105.4

Oceananigans v0.105.4

Diff since v0.105.3

Merged pull requests:

• (0.105.4) Add basic tests for Reactant-Oceananigans correctness (#5093) (@glwagner)
• Rename JULIA_DEPOT_PATH to the .julia for buildkite (#5368) (@tomchor)
• Use view instead of indexing in cpu_face_constructor_r (#5376) (@glwagner)
• Fix HydroStaticFreeSurfaceModel init for open boundary conditions with SplitExplicitFreeSurface (#5378) (@rafmudaf)

Closed issues:

• Bug with Reactant + Periodic BCs + ParallelTestRunner (#5208)

v0.105.3

Oceananigans v0.105.3

Diff since v0.105.2

Merged pull requests:

• (0.105.3) Fix interpolation of terms in chain horizontal derivatives for MutableVerticalDiscretization (#5339) (@glwagner)
• Restructure AGENTS.md into multi-file agent configuration (#5350) (@glwagner)
• (0.105.2) Fix with_halo for a TripolarGrid (#5353) (@simone-silvestri)
• Fix typo SKR3 -> SRK3 (#5360) (@briochemc)
• Update papers section in index.md (#5362) (@navidcy)
• Add 9 missing papers to the reference list (#5363) (@glwagner)
• Add new reference to Zheng et al. (2025) in index (#5364) (@navidcy)
• Fix ContinuousForcing field index mismatch in HydrostaticFreeSurfaceModel (#5370) (@glwagner)
• Add dependency guardrail to Common Pitfalls (#5371) (@glwagner)

Closed issues:

• Reformulating continuous forcing in discrete form giving unexpected results (#5369)