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  1. Stochastic-Epidemic-Extinction Stochastic-Epidemic-Extinction Public

    Code to plot extinction time predictions and distributions, as well as for performing Gillespie simulations of SIR model and spatial birth death model

    MATLAB

  2. MutliplexDriveResistanceSims MutliplexDriveResistanceSims Public

    Wright-Fisher combined with Beverton-Holt stochastic simulations of the evolution of multiplex drive resistance. Multinomial sampling has option of fast and accurate hybrid Poisson-Gaussian approxi…

    MATLAB

  3. MultiplexSuppressionDriveResistanceSims MultiplexSuppressionDriveResistanceSims Public

    Stochastic simulations of multiplex suppression drives with multiple types of resistance alleles (R1, R2, R3)

    MATLAB

  4. SpatialSoftsSweepSimulations SpatialSoftsSweepSimulations Public

    Stochastic spatial simulations of soft selective sweeps including genetic drift and multiple origins of different alleles/"haplotypes" of a single advantageous allele.

    Julia 1