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completed assignment 2 #2

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0097e9b
completed assignment 2
Anjishnubose Feb 28, 2025
35df220
corrected reading CSV file using readline
Anjishnubose Mar 4, 2025
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208 changes: 190 additions & 18 deletions 02_activities/assignments/assignment_2.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -75,6 +75,28 @@
"```"
]
},
{
"cell_type": "code",
"execution_count": 1,
"metadata": {},
"outputs": [],
"source": [
"all_paths = [\n",
" \"../../05_src/data/assignment_2_data/inflammation_01.csv\",\n",
" \"../../05_src/data/assignment_2_data/inflammation_02.csv\",\n",
" \"../../05_src/data/assignment_2_data/inflammation_03.csv\",\n",
" \"../../05_src/data/assignment_2_data/inflammation_04.csv\",\n",
" \"../../05_src/data/assignment_2_data/inflammation_05.csv\",\n",
" \"../../05_src/data/assignment_2_data/inflammation_06.csv\",\n",
" \"../../05_src/data/assignment_2_data/inflammation_07.csv\",\n",
" \"../../05_src/data/assignment_2_data/inflammation_08.csv\",\n",
" \"../../05_src/data/assignment_2_data/inflammation_09.csv\",\n",
" \"../../05_src/data/assignment_2_data/inflammation_10.csv\",\n",
" \"../../05_src/data/assignment_2_data/inflammation_11.csv\",\n",
" \"../../05_src/data/assignment_2_data/inflammation_12.csv\"\n",
"]"
]
},
{
"cell_type": "markdown",
"metadata": {
Expand All @@ -90,16 +112,145 @@
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "n0m48JsS-nMC"
},
"outputs": [],
"execution_count": 2,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n"
]
}
],
"source": [
"contents = []\n",
"with open(all_paths[0], 'r') as f:\n",
" # YOUR CODE HERE: Use the readline() or readlines() method to read the .csv file into 'contents'\n",
" \n",
" # YOUR CODE HERE: Iterate through 'contents' using a for loop and print each row for inspection"
" for line in f:\n",

@kelichiu kelichiu Mar 3, 2025 •
edited
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The instruction specified use readline() or readlines().
Instead of using a for loop to append each row into contents, we can just do:
contents = f.readlines()

@Anjishnubose Anjishnubose Mar 4, 2025

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Hey,
I corrected this issue and now use readlines() to read the CSV file.
Thanks

" contents.append(line)\n",
"# YOUR CODE HERE: Iterate through 'contents' using a for loop and print each row for inspection\n",
"for content in contents:\n",
" print(content)"
]
},
{
Expand Down Expand Up @@ -133,7 +284,7 @@
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 3,
"metadata": {
"id": "82-bk4CBB1w4"
},
Expand All @@ -149,12 +300,15 @@
" # implement the specific operation based on the 'operation' argument\n",
" if operation == 'mean':\n",
" # YOUR CODE HERE: calculate the mean (average) number of flare-ups for each patient\n",
" summary_values = np.mean(data, axis=ax)\n",
"\n",
" elif operation == 'max':\n",
" # YOUR CODE HERE: calculate the maximum number of flare-ups experienced by each patient\n",
" summary_values = np.max(data, axis=ax)\n",
"\n",
" elif operation == 'min':\n",
" # YOUR CODE HERE: calculate the minimum number of flare-ups experienced by each patient\n",
" summary_values = np.min(data, axis=ax)\n",
"\n",
" else:\n",
" # if the operation is not one of the expected values, raise an error\n",
Expand All @@ -165,11 +319,19 @@
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 4,
"metadata": {
"id": "3TYo0-1SDLrd"
},
"outputs": [],
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"60\n"
]
}
],
"source": [
"# test it out on the data file we read in and make sure the size is what we expect i.e., 60\n",
"# Your output for the first file should be 60\n",
Expand Down Expand Up @@ -232,7 +394,7 @@
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 5,
"metadata": {
"id": "_svDiRkdIwiT"
},
Expand All @@ -255,7 +417,7 @@
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 6,
"metadata": {
"id": "LEYPM5v4JT0i"
},
Expand All @@ -265,15 +427,24 @@
"\n",
"def detect_problems(file_path):\n",
" #YOUR CODE HERE: use patient_summary() to get the means and check_zeros() to check for zeros in the means\n",
"\n",
" return"
" data_mean = patient_summary(file_path, 'mean')\n",
" \n",
" return check_zeros(data_mean)"
]
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 7,
"metadata": {},
"outputs": [],
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"False\n"
]
}
],
"source": [
"# Test out your code here\n",
"# Your output for the first file should be False\n",
Expand Down Expand Up @@ -318,7 +489,8 @@
"provenance": []
},
"kernelspec": {
"display_name": "Python 3",
"display_name": "dsi_participant",
"language": "python",
"name": "python3"
},
"language_info": {
Expand All @@ -331,7 +503,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.11.8"
"version": "3.9.21"
}
},
"nbformat": 4,
Expand Down