spectrl/CITATION.cff at main · tacular-omics/spectrl · GitHub

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cff-version: 1.2.0
message: "If you use spectrl, please cite this software using these metadata."
title: "spectrl: URL-safe interchange for mass spectra"
abstract: >-
  spectrl defines and implements a URL-safe interchange format for individual
  mass spectra. A spectrl.v3 token contains peak arrays, precursor information,
  selected acquisition context and modeled metadata based on mzML controlled-vocabulary terms. The payload is encoded as CBOR and Base64url text
  with a CRC-32 checksum. Four versioned numeric encodings support fixed
  lossless and controlled-loss profiles. Compression applies once to the complete
  CBOR document, using zlib by default. PSI-MS accessions retain scientific array
  and metadata identity. Applications can register namespaced custom numeric
  encodings and extensions. Because the spectrum is carried in the
  token, it can be placed in URL fragments, query parameters, data URIs, QR
  codes, notebooks, and publication supplements without requiring a repository
  lookup or application backend. The Python package provides encoding,
  decoding, validation, URL helpers, a command-line interface, and conversion
  from mzmlpy spectrum objects. A separate TypeScript implementation
  supports browsers and Node, and shared conformance vectors test agreement
  between the two implementations. spectrl is intended for self-contained
  spectrum exchange and application handoffs. Repository-based identifiers
  remain more appropriate when persistent archival lookup is the primary goal.
type: software
authors:
  - given-names: Patrick T.
    family-names: Garrett
    orcid: https://orcid.org/0000-0002-8434-9693
    affiliation: Scripps Research Institute
  - given-names: John R.
    family-names: Yates
    name-suffix: III
    orcid: https://orcid.org/0000-0001-5267-1672
    affiliation: Scripps Research Institute
license: Apache-2.0
repository-code: "https://github.com/tacular-omics/spectrl"
repository-artifact: "https://github.com/tacular-omics/spectrl/releases"
url: "https://tacular-omics.github.io/spectrl/"
keywords:
  - Python
  - Proteomics
  - Mass Spectrometry
  - mzML
  - Spectrum Sharing
  - Spectrum Encoding
version: "3.0.0"