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skip_nf_test.json
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140 lines (140 loc) · 5.85 KB
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{
"conda": [
"modules/nf-core/numorph/intensity",
"modules/nf-core/numorph/resample",
"modules/nf-core/mat2json",
"modules/nf-core/angsd/gl",
"modules/nf-core/annotsv/installannotations",
"modules/nf-core/bakta/bakta",
"modules/nf-core/bakta/baktadbdownload",
"modules/nf-core/bases2fastq",
"modules/nf-core/basicpy",
"modules/nf-core/bcl2fastq",
"modules/nf-core/bclconvert",
"modules/nf-core/braker3",
"modules/nf-core/celesta",
"modules/nf-core/cellpose",
"modules/nf-core/cellranger/count",
"modules/nf-core/cellranger/mkfastq",
"modules/nf-core/cellranger/mkgtf",
"modules/nf-core/cellranger/mkref",
"modules/nf-core/cellranger/mkvdjref",
"modules/nf-core/cellranger/multi",
"modules/nf-core/cellranger/vdj",
"modules/nf-core/cellrangerarc/count",
"modules/nf-core/cellrangerarc/mkfastq",
"modules/nf-core/cellrangerarc/mkgtf",
"modules/nf-core/cellrangerarc/mkref",
"modules/nf-core/cellrangeratac/count",
"modules/nf-core/cellrangeratac/mkfastq",
"modules/nf-core/cellrangeratac/mkref",
"modules/nf-core/checkqc",
"modules/nf-core/clair3",
"modules/nf-core/coreograph",
"modules/nf-core/ctatsplicing/prepgenomelib",
"modules/nf-core/ctatsplicing/startocancerintrons",
"modules/nf-core/custom/dumpsoftwareversions",
"modules/nf-core/deepcell/mesmer",
"modules/nf-core/deepsomatic",
"modules/nf-core/deepvariant",
"modules/nf-core/deepvariant/callvariants",
"modules/nf-core/deepvariant/makeexamples",
"modules/nf-core/deepvariant/postprocessvariants",
"modules/nf-core/deepvariant/rundeepvariant",
"modules/nf-core/deepvariant/vcfstatsreport",
"subworkflows/nf-core/dia_proteomics_analysis",
"modules/nf-core/diann",
"modules/nf-core/doubletdetection",
"modules/nf-core/eklipse",
"modules/nf-core/fastk/fastk",
"modules/nf-core/fastk/histex",
"modules/nf-core/fastk/merge",
"modules/nf-core/fcs/fcsadaptor",
"modules/nf-core/fcs/fcsgx",
"modules/nf-core/force/cube",
"modules/nf-core/force/tileextent",
"modules/nf-core/ganon/buildcustom",
"modules/nf-core/ganon/classify",
"modules/nf-core/ganon/report",
"modules/nf-core/ganon/table",
"modules/nf-core/galah",
"modules/nf-core/gatk4/cnnscorevariants",
"modules/nf-core/gatk4/determinegermlinecontigploidy",
"modules/nf-core/gatk4/germlinecnvcaller",
"modules/nf-core/gatk4/postprocessgermlinecnvcalls",
"modules/nf-core/gatk4/unmarkduplicates",
"modules/nf-core/gatk4spark",
"modules/nf-core/genescopefk",
"modules/nf-core/happy/sompy",
"modules/nf-core/ilastik/multicut",
"modules/nf-core/ilastik/pixelclassification",
"modules/nf-core/imputeme/vcftoprs",
"modules/nf-core/islandpath",
"modules/nf-core/mcquant",
"modules/nf-core/mcstaging/macsima2mc",
"modules/nf-core/mcstaging/phenoimager2mc",
"modules/nf-core/merquryfk/katcomp",
"modules/nf-core/merquryfk/katgc",
"modules/nf-core/merquryfk/merquryfk",
"modules/nf-core/merquryfk/ploidyplot",
"modules/nf-core/mitohifi/findmitoreference",
"modules/nf-core/mitohifi/mitohifi",
"modules/nf-core/molkartgarage/clahe",
"modules/nf-core/ncbitools/vecscreen",
"modules/nf-core/ngscheckmate/fastq",
"modules/nf-core/ngscheckmate/vafncm",
"modules/nf-core/parabricks",
"modules/nf-core/purgedups/calcuts",
"modules/nf-core/purgedups/getseqs",
"modules/nf-core/purgedups/histplot",
"modules/nf-core/purgedups/purgedups",
"modules/nf-core/scimap/mcmicro",
"modules/nf-core/scimap/spatiallda",
"modules/nf-core/sentieon/bwaindex",
"modules/nf-core/sentieon/bwamem",
"modules/nf-core/sentieon/datametrics",
"modules/nf-core/sentieon/dedup",
"modules/nf-core/sentieon/qualcal",
"modules/nf-core/spaceranger/count",
"modules/nf-core/spaceranger/mkgtf",
"modules/nf-core/spaceranger/mkref",
"modules/nf-core/spotiflow",
"modules/nf-core/sushie",
"modules/nf-core/svanalyzer/svbenchmark",
"modules/nf-core/svtk/baftest",
"modules/nf-core/svtk/rdtest2vcf",
"modules/nf-core/svtk/standardize",
"modules/nf-core/universc",
"modules/nf-core/vt/decompose",
"modules/nf-core/wittyer",
"modules/nf-core/xeniumranger/import-segmentation",
"modules/nf-core/xeniumranger/relabel",
"modules/nf-core/xeniumranger/rename",
"modules/nf-core/xeniumranger/resegment",
"modules/nf-core/opt/flip",
"modules/nf-core/opt/track",
"modules/nf-core/opt/stat",
"modules/nf-core/fastavalidator",
"subworkflows/nf-core/bam_tumor_normal_somatic_variant_calling_strelka",
"subworkflows/nf-core/bcl_demultiplex",
"subworkflows/nf-core/deepvariant",
"subworkflows/nf-core/fasta_clean_fcs",
"subworkflows/nf-core/fasta_newick_epang_gappa",
"subworkflows/nf-core/fastq_align_bamcmp_bwa",
"subworkflows/nf-core/fastq_align_bwa"
],
"docker": [
"modules/nf-core/parabricks",
"modules/nf-core/sparsesignatures",
"subworkflows/nf-core/deepvariant/tests/equality"
],
"singularity": [
"modules/nf-core/bases2fastq",
"modules/nf-core/deepsomatic",
"modules/nf-core/deepvariant/rundeepvariant",
"modules/nf-core/deepvariant/vcfstatsreport",
"modules/nf-core/parabricks",
"modules/nf-core/universc",
"subworkflows/nf-core/deepvariant/tests/equality"
]
}