As discussed in many issues the current format of mapping metadata entries to sequences in the multi-segmented case is suboptimal. Here we proceed as voted for in microbioinfo: https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399
Users can add an additional column fastaId to the metadata tsv with a space separated list of all the fasta headers that should be linked to that entry. If no such entry is supplied we fall back to using the submissionId and assume this is the same as the fasta header Id.
Preprocessing will now assign the segment.
Steps:
As discussed in many issues the current format of mapping metadata entries to sequences in the multi-segmented case is suboptimal. Here we proceed as voted for in microbioinfo: https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399
Users can add an additional column
fastaIdto the metadata tsv with a space separated list of all the fasta headers that should be linked to that entry. If no such entry is supplied we fall back to using thesubmissionIdand assume this is the same as the fasta header Id.Preprocessing will now assign the segment.
Steps: