@@ -534,31 +534,31 @@ GROMACS. In the terminal, type:
534534
535535.. code-block :: bash
536536
537- gmx energy -f min.edr -o min-pe .xvg
537+ gmx energy -f min.edr -o min-Ep .xvg
538538
539539 Choose ``potential `` by typing ``5 `` (the number may differ in your case),
540540then press ``Enter `` twice.
541541
542542Here, the portable energy file **min.edr ** produced
543543by GROMACS during the minimization run is used, and the
544- result is saved a **.xvg ** file named **min-pe .xvg **. **.xvg ** files
544+ result is saved a **.xvg ** file named **min-Ep .xvg **. **.xvg ** files
545545can be oppened with the Grace software (or equivalent) :cite: `grace `:
546546
547547.. code-block :: bash
548548
549549 xmgrace min-pe.xvg
550550
551- .. figure :: figures/potential-energy- min-light .png
551+ .. figure :: figures/min-Ep .png
552552 :alt: Gromacs tutorial : plot of the energy versus time.
553553 :class: only-light
554554
555- .. figure :: figures/potential-energy- min-dark .png
555+ .. figure :: figures/min-Ep-dm .png
556556 :alt: Gromacs tutorial : plot of the energy versus time.
557557 :class: only-dark
558558
559559.. container :: figurelegend
560560
561- Figure: Evolution of the potential energy :math: `E_\text {p}` as a function of the
561+ Figure: Evolution of the potential energy, :math: `E_\text {p}`, as a function of the
562562 number of steps during energy minimization.
563563
564564One can see from the energy plot that the potential energy is initially quite large,
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