diff --git a/easybuild/easyconfigs/b/Boltz-2/Boltz-2-2.2.1-foss-2024a-CUDA-12.6.0.eb b/easybuild/easyconfigs/b/Boltz-2/Boltz-2-2.2.1-foss-2024a-CUDA-12.6.0.eb new file mode 100644 index 000000000000..b5ba4c6640bc --- /dev/null +++ b/easybuild/easyconfigs/b/Boltz-2/Boltz-2-2.2.1-foss-2024a-CUDA-12.6.0.eb @@ -0,0 +1,95 @@ +easyblock = 'PythonBundle' + +name = 'Boltz-2' +version = '2.2.1' +versionsuffix = '-CUDA-%(cudaver)s' + +homepage = 'https://github.com/jwohlwend/boltz' +description = """ +Boltz-2 is a new biomolecular foundation model that goes beyond AlphaFold3 and Boltz-1 +by jointly modeling complex structures and binding affinities, a critical component towards accurate molecular design. +""" + +toolchain = {'name': 'foss', 'version': '2024a'} + +builddependencies = [ + ('hatchling', '1.27.0'), +] +dependencies = [ + ('CUDA', '12.6.0', '', SYSTEM), + ('Python', '3.12.3'), + ('Python-bundle-PyPI', '2024.06'), + ('SciPy-bundle', '2024.05'), + ('Biopython', '1.84'), + ('PyYAML', '6.0.2'), + ('PyTorch', '2.7.1', '-CUDA-%(cudaver)s'), + ('Hydra', '1.3.2'), + ('PyTorch-Lightning', '2.5.6', '-CUDA-%(cudaver)s'), + ('RDKit', '2025.03.3'), + ('dm-tree', '0.1.9'), + ('einops', '0.8.1'), + ('gemmi', '0.7.1'), + ('numba', '0.60.0'), + ('scikit-learn', '1.6.1'), + ('wandb', '0.20.1'), +] + +exts_list = [ + ('urllib3', '2.0.7', { + 'checksums': ['c97dfde1f7bd43a71c8d2a58e369e9b2bf692d1334ea9f9cae55add7d0dd0f84'], + }), + ('ihm', '1.7', { + 'checksums': ['f7d3b9a76d9652f7091bbd1c6bea044a1d40b35bcba9b64c8e51a061fc2463de'], + }), + ('frozendict', '2.4.5', { + 'checksums': ['fd7add309789595c044c0155a0bddfa9d20c77f65de1e33a14aa3033b936ef63'], + }), + ('types-requests', '2.32.0.20240914', { + 'modulename': False, + 'checksums': ['2850e178db3919d9bf809e434eef65ba49d0e7e33ac92d588f4a5e295fffd405'], + }), + ('einx', '0.3.0', { + 'checksums': ['17ff87c6a0f68ab358c1da489f00e95f1de106fd12ff17d0fb3e210aaa1e5f8c'], + }), + ('fairscale', '0.4.13', { + 'checksums': ['1b797825c427f5dba92253fd0d8daa574e8bd651a2423497775fab1b30cfb768'], + }), + ('mashumaro', '3.14', { + 'checksums': ['5ef6f2b963892cbe9a4ceb3441dfbea37f8c3412523f25d42e9b3a7186555f1d'], + }), + ('modelcif', '1.2', { + 'checksums': ['517d2a7be67c96fd56dcc3b50cf7bb0b130958c325653d9925f9a5dbfe151d78'], + }), + ('chembl-structure-pipeline', '1.2.4', { + 'checksums': ['e381500ac815ded31cc4841d1fbfe7c089788a07f2fbaa9bb818b52facfa9030'], + }), + ('packaging', '25.0', { + 'checksums': ['d443872c98d677bf60f6a1f2f8c1cb748e8fe762d2bf9d3148b5599295b0fc4f'], + }), + ('opt-einsum', '3.4.0', { + 'modulename': 'opt_einsum', + 'checksums': ['96ca72f1b886d148241348783498194c577fa30a8faac108586b14f1ba4473ac'], + }), + ('cuequivariance', '0.8.1', { + 'checksums': ['f398dd0b61f80894994ef12a6ac7dd844e3d301a5486b99ff17d0082f1e22b4c'], + }), + ('cuequivariance-torch', '0.8.1', { + 'checksums': ['03a924b7a4c57bed87ca3d0345218eb805d8d2e848f5f5c57192a2e4a8ebc3db'], + }), + ('cuequivariance-ops-torch-cu12', '0.8.1', { + 'source_tmpl': + 'cuequivariance_ops_torch_cu12-0.8.1-cp312-cp312-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl', + 'checksums': ['839a262c6bb461684e7d929f5bf4b96c2fa58a5308e64c213ec7835fb1c3907e'], + }), + ('boltz', version, { + 'checksums': ['dfbc5847a9d378a1e24829ff53c3faa182fb945775074712c130a3884710736d'], + 'preinstallopts': 'sed -i -e \'s/==.*/\\",/g\' pyproject.toml && ', + 'source_urls': ['https://github.com/jwohlwend/boltz/archive/refs/tags/'], + 'source_tmpl': 'v%(version)s.tar.gz', + 'runtest': 'export HOME=%(builddir)s && cd %(start_dir)s && pytest -svv tests/', + 'testinstall': True}), +] + +sanity_check_commands = ["boltz 2>&1 | grep 'Usage: boltz'"] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Boltz-2/Boltz-2-2.2.1-foss-2024a.eb b/easybuild/easyconfigs/b/Boltz-2/Boltz-2-2.2.1-foss-2024a.eb new file mode 100644 index 000000000000..9011c0647393 --- /dev/null +++ b/easybuild/easyconfigs/b/Boltz-2/Boltz-2-2.2.1-foss-2024a.eb @@ -0,0 +1,88 @@ +easyblock = 'PythonBundle' + +name = 'Boltz-2' +version = '2.2.1' + +homepage = 'https://github.com/jwohlwend/boltz' +description = """ +Boltz-2 is a new biomolecular foundation model that goes beyond AlphaFold3 and Boltz-1 +by jointly modeling complex structures and binding affinities, a critical component towards accurate molecular design. +""" + +toolchain = {'name': 'foss', 'version': '2024a'} + +builddependencies = [ + ('hatchling', '1.27.0'), +] +dependencies = [ + ('Python', '3.12.3'), + ('Python-bundle-PyPI', '2024.06'), + ('SciPy-bundle', '2024.05'), + ('Biopython', '1.84'), + ('PyYAML', '6.0.2'), + ('PyTorch', '2.6.0'), + ('Hydra', '1.3.2'), + ('PyTorch-Lightning', '2.5.2'), + ('RDKit', '2025.03.3'), + ('dm-tree', '0.1.9'), + ('einops', '0.8.1'), + ('gemmi', '0.7.1'), + ('numba', '0.60.0'), + ('scikit-learn', '1.6.1'), + ('wandb', '0.20.1'), +] + +exts_list = [ + ('urllib3', '2.0.7', { + 'checksums': ['c97dfde1f7bd43a71c8d2a58e369e9b2bf692d1334ea9f9cae55add7d0dd0f84'], + }), + ('ihm', '1.7', { + 'checksums': ['f7d3b9a76d9652f7091bbd1c6bea044a1d40b35bcba9b64c8e51a061fc2463de'], + }), + ('frozendict', '2.4.5', { + 'checksums': ['fd7add309789595c044c0155a0bddfa9d20c77f65de1e33a14aa3033b936ef63'], + }), + ('types-requests', '2.32.0.20240914', { + 'modulename': False, + 'checksums': ['2850e178db3919d9bf809e434eef65ba49d0e7e33ac92d588f4a5e295fffd405'], + }), + ('einx', '0.3.0', { + 'checksums': ['17ff87c6a0f68ab358c1da489f00e95f1de106fd12ff17d0fb3e210aaa1e5f8c'], + }), + ('fairscale', '0.4.13', { + 'checksums': ['1b797825c427f5dba92253fd0d8daa574e8bd651a2423497775fab1b30cfb768'], + }), + ('mashumaro', '3.14', { + 'checksums': ['5ef6f2b963892cbe9a4ceb3441dfbea37f8c3412523f25d42e9b3a7186555f1d'], + }), + ('modelcif', '1.2', { + 'checksums': ['517d2a7be67c96fd56dcc3b50cf7bb0b130958c325653d9925f9a5dbfe151d78'], + }), + ('chembl-structure-pipeline', '1.2.4', { + 'checksums': ['e381500ac815ded31cc4841d1fbfe7c089788a07f2fbaa9bb818b52facfa9030'], + }), + ('packaging', '25.0', { + 'checksums': ['d443872c98d677bf60f6a1f2f8c1cb748e8fe762d2bf9d3148b5599295b0fc4f'], + }), + ('opt-einsum', '3.4.0', { + 'modulename': 'opt_einsum', + 'checksums': ['96ca72f1b886d148241348783498194c577fa30a8faac108586b14f1ba4473ac'], + }), + ('cuequivariance', '0.8.1', { + 'checksums': ['f398dd0b61f80894994ef12a6ac7dd844e3d301a5486b99ff17d0082f1e22b4c'], + }), + ('cuequivariance-torch', '0.8.1', { + 'checksums': ['03a924b7a4c57bed87ca3d0345218eb805d8d2e848f5f5c57192a2e4a8ebc3db'], + }), + ('boltz', version, { + 'checksums': ['dfbc5847a9d378a1e24829ff53c3faa182fb945775074712c130a3884710736d'], + 'preinstallopts': 'sed -i -e \'s/==.*/\\",/g\' pyproject.toml && ', + 'source_urls': ['https://github.com/jwohlwend/boltz/archive/refs/tags/'], + 'source_tmpl': 'v%(version)s.tar.gz', + 'runtest': 'export HOME=%(builddir)s && cd %(start_dir)s && pytest -svv tests/', + 'testinstall': True}), +] + +sanity_check_commands = ["boltz 2>&1 | grep 'Usage: boltz'"] + +moduleclass = 'bio'