Hello, I had this question when I ran charger:
CharGer::runIndelModules Error: Cannot evaluate PVS1 or PM4: No gene list supplied. which argument should I provide?
I used charger -f ${input} -o ${out} -D --inheritanceGeneList ${inherit} --mac-clinvar-tsv ${clinvar} --PP2GeneList ${pp2} -z ${mmVariants} --exac-vcf ${ExAC} -H $d --BP1GeneList ${bp1} -g ${mmGenes}.
Another question : Unsupported VEP version or no gnomAD AF annotation in input file; will search for ExAC frequencies...
my input file was annotated with VEP. I want you will reply to me soon, thanks!
Hello, I had this question when I ran charger:$d --BP1GeneList $ {bp1} -g ${mmGenes}.
CharGer::runIndelModules Error: Cannot evaluate PVS1 or PM4: No gene list supplied. which argument should I provide?
I used charger -f ${input} -o ${out} -D --inheritanceGeneList ${inherit} --mac-clinvar-tsv ${clinvar} --PP2GeneList ${pp2} -z ${mmVariants} --exac-vcf ${ExAC} -H
Another question : Unsupported VEP version or no gnomAD AF annotation in input file; will search for ExAC frequencies...
my input file was annotated with VEP. I want you will reply to me soon, thanks!