diff --git a/recipes/masurca/build.sh b/recipes/masurca/build.sh index c727afeb25553..c4739ab2c1fea 100755 --- a/recipes/masurca/build.sh +++ b/recipes/masurca/build.sh @@ -47,3 +47,5 @@ ${BINDIR}/masurca -g masurca_config_example.txt cd ${SRC_DIR}/Flye make -j"${CPU_COUNT}" install -v -m 0755 bin/flye* "${PREFIX}/bin" + +find "${PREFIX}/bin" -name "*.pl" -exec sed -i '1s|^#!.*perl.*|#!/usr/bin/env perl|' {} + \ No newline at end of file diff --git a/recipes/masurca/meta.yaml b/recipes/masurca/meta.yaml index 0ab8a8219afb3..077a4240268db 100644 --- a/recipes/masurca/meta.yaml +++ b/recipes/masurca/meta.yaml @@ -12,7 +12,7 @@ source: - 0002-48bit_iterator.patch build: - number: 0 + number: 1 skip: True # [osx] run_exports: - {{ pin_subpackage(name, max_pin='x') }} @@ -22,6 +22,7 @@ requirements: - {{ compiler('c') }} - {{ compiler('cxx') }} - make + - cmake - automake - autoconf - libtool @@ -31,11 +32,19 @@ requirements: - bzip2 - libxcrypt - boost-cpp + - xz + - ncurses + - openssl + - gdbm run: - boost-cpp - perl + - python - grep - bwa + - file + - gzip + - coreutils test: commands: @@ -58,3 +67,5 @@ extra: identifiers: - biotools:masurca - doi:10.1093/bioinformatics/btt476 + skip-lints: + - compiler_needs_stdlib_c # until https://github.com/bioconda/bioconda-utils/issues/1095 is resolved \ No newline at end of file