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Development rules

  • This repository is the browser shell. The RDP algorithm belongs in the pinned vendor/nextRDP-core submodule and must not be copied or independently modified here.
  • Only expose analysis methods actually implemented by nextRDP-core; keep the method controls and review views honest about whether a lane is source-shaped or fully validated. The current core exposes RDP, GENECONV, MaxChi, CHIMAERA, 3SEQ, BootScan, and SISCAN.
  • Keep all sequence analysis local to the browser; do not upload user alignments.
  • Preserve the Windows 95 visual language unless a redesign is explicitly requested.
  • Never add dataset-specific behavior or fixture-derived runtime logic.
  • Record newly confirmed original-RDP bugs or quirks in ../nextRDP-core/RDPbugsandquirks.md.