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866 lines (725 loc) · 34.6 KB
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# Copyright 2021-present MongoDB, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# Cython compiler directives
# distutils: language=c++
# cython: language_level=3
# cython: freethreading_compatible = True
# Stdlib imports
import sys
# Python imports
import bson
import numpy as np
from pyarrow import timestamp, default_memory_pool
from pymongoarrow.errors import InvalidBSON
from pymongoarrow.types import ObjectIdType, Decimal128Type as Decimal128Type_, BinaryType, CodeType
# Cython imports
from cpython cimport object
from libcpp cimport bool as cbool
from libc.math cimport isnan
from libcpp.string cimport string as cstring
from libc.string cimport memcpy
from libcpp cimport nullptr
from pyarrow.lib cimport *
from pymongoarrow.libarrow cimport *
from pymongoarrow.libbson cimport *
# Placeholder numbers for the date types.
# Keep in sync with _BsonArrowTypes in types.py.
cdef uint8_t ARROW_TYPE_DATE32 = 100
cdef uint8_t ARROW_TYPE_DATE64 = 101
cdef uint8_t ARROW_TYPE_NULL = 102
# libbson version
libbson_version = bson_get_version().decode('utf-8')
cdef const bson_t* bson_reader_read_safe(bson_reader_t* stream_reader) except? NULL:
cdef cbool reached_eof = False
cdef const bson_t* doc = bson_reader_read(stream_reader, &reached_eof)
if doc == NULL and not reached_eof:
raise InvalidBSON("Could not read BSON document stream")
return doc
cdef str _bson_type_name(uint8_t type_t):
if type_t == BSON_TYPE_EOD:
result = "EOD"
elif type_t == BSON_TYPE_UTF8:
result = "string"
elif type_t == BSON_TYPE_DOUBLE:
result = "double"
elif type_t == BSON_TYPE_DOCUMENT:
result = "document"
elif type_t == BSON_TYPE_ARRAY:
result = "array"
elif type_t == BSON_TYPE_BINARY:
result = "binary"
elif type_t == BSON_TYPE_UNDEFINED:
result = "undefined"
elif type_t == BSON_TYPE_OID:
result = "objectId"
elif type_t == BSON_TYPE_BOOL:
result = "boolean"
elif type_t == BSON_TYPE_DATE_TIME:
result = "datetime"
elif type_t == BSON_TYPE_NULL:
result = "null"
elif type_t == BSON_TYPE_REGEX:
result = "regex"
elif type_t == BSON_TYPE_DBPOINTER:
result = "dbpointer"
elif type_t == BSON_TYPE_CODE:
result = "code"
elif type_t == BSON_TYPE_SYMBOL:
result = "symbol"
elif type_t == BSON_TYPE_CODEWSCOPE:
result = "codewscope"
elif type_t == BSON_TYPE_INT32:
result = "int32"
elif type_t == BSON_TYPE_TIMESTAMP:
result = "timestamp"
elif type_t == BSON_TYPE_INT64:
result = "int64"
elif type_t == BSON_TYPE_DECIMAL128:
result = "decimal128"
elif type_t == BSON_TYPE_MAXKEY:
result = "maxkey"
elif type_t == BSON_TYPE_MINKEY:
result = "minkey"
elif type_t == ARROW_TYPE_DATE32:
result = "date32"
elif type_t == ARROW_TYPE_DATE64:
result = "date64"
else:
result = f"Unknown type: {str(type_t)}"
return result
cdef bool next_is_double_nan(bson_iter_t *iter, bson_type_t value_t):
cdef bson_iter_t *tmp = iter
cdef double d
if value_t != BSON_TYPE_DOUBLE: # bail if the next element is not a double
return False
if tmp == NULL:
return False
d = bson_iter_as_double(tmp)
return isnan(d) # true iff the double is NaN
cdef class BuilderManager:
cdef:
dict builder_map
dict parent_types
dict parent_names
uint64_t count
bint has_schema
object tzinfo
object pool
bint allow_invalid
def __cinit__(self, dict schema_map, bint has_schema, object tzinfo, bint allow_invalid):
self.has_schema = has_schema
self.tzinfo = tzinfo
self.count = 0
self.builder_map = {}
self.parent_names = {}
self.parent_types = {}
self.pool = default_memory_pool()
self.allow_invalid = allow_invalid
# Unpack the schema map.
for fname, (ftype, arrow_type) in schema_map.items():
name = fname.encode('utf-8')
# special-case initializing builders for parameterized types
if ftype == BSON_TYPE_DATE_TIME:
if tzinfo is not None and arrow_type.tz is None:
arrow_type = timestamp(arrow_type.unit, tz=tzinfo) # noqa: PLW2901
self.builder_map[name] = DatetimeBuilder(dtype=arrow_type, memory_pool=self.pool, allow_invalid=allow_invalid)
elif ftype == BSON_TYPE_BINARY:
self.builder_map[name] = BinaryBuilder(arrow_type.subtype, memory_pool=self.pool, allow_invalid=allow_invalid)
else:
# We only use the doc_iter for binary arrays, which are handled already.
self.get_builder(name, ftype, <bson_iter_t *>nullptr, allow_invalid=allow_invalid)
cdef _ArrayBuilderBase get_builder(self, cstring key, bson_type_t value_t, bson_iter_t * doc_iter, bint allow_invalid):
cdef _ArrayBuilderBase builder = None
cdef bson_subtype_t subtype
cdef const uint8_t *val_buf = NULL
cdef uint32_t val_buf_len = 0
# Mark a null key as missing until we find it.
if value_t == BSON_TYPE_NULL or next_is_double_nan(doc_iter, value_t):
self.builder_map[key] = None
return
if builder is not None:
return builder
# Handle the builders.
if value_t == BSON_TYPE_DATE_TIME:
if self.tzinfo is not None:
arrow_type = timestamp('ms', tz=self.tzinfo)
builder = DatetimeBuilder(dtype=arrow_type, memory_pool=self.pool)
else:
builder = DatetimeBuilder(memory_pool=self.pool)
elif value_t == BSON_TYPE_DOCUMENT:
builder = DocumentBuilder()
elif value_t == BSON_TYPE_ARRAY:
builder = ListBuilder(memory_pool=self.pool)
elif value_t == BSON_TYPE_BINARY:
if doc_iter == NULL:
raise ValueError('Did not pass a doc_iter!')
bson_iter_binary (doc_iter, &subtype,
&val_buf_len, &val_buf)
builder = BinaryBuilder(subtype, memory_pool=self.pool, allow_invalid=allow_invalid)
elif value_t == ARROW_TYPE_DATE32:
builder = Date32Builder(memory_pool=self.pool, allow_invalid=allow_invalid)
elif value_t == ARROW_TYPE_DATE64:
builder = Date64Builder(memory_pool=self.pool, allow_invalid=allow_invalid)
elif value_t == BSON_TYPE_INT32:
builder = Int32Builder(memory_pool=self.pool, allow_invalid=allow_invalid)
elif value_t == BSON_TYPE_INT64:
builder = Int64Builder(memory_pool=self.pool, allow_invalid=allow_invalid)
elif value_t == BSON_TYPE_DOUBLE:
builder = DoubleBuilder(memory_pool=self.pool, allow_invalid=allow_invalid)
elif value_t == BSON_TYPE_OID:
builder = ObjectIdBuilder(memory_pool=self.pool, allow_invalid=allow_invalid)
elif value_t == BSON_TYPE_UTF8:
builder = StringBuilder(memory_pool=self.pool, allow_invalid=allow_invalid)
elif value_t == BSON_TYPE_BOOL:
builder = BoolBuilder(memory_pool=self.pool, allow_invalid=allow_invalid)
elif value_t == BSON_TYPE_DECIMAL128:
builder = Decimal128Builder(memory_pool=self.pool, allow_invalid=allow_invalid)
elif value_t == BSON_TYPE_CODE:
builder = CodeBuilder(memory_pool=self.pool, allow_invalid=allow_invalid)
self.builder_map[key] = builder
return builder
cdef void parse_document(self, bson_iter_t * doc_iter, cstring base_key, uint8_t parent_type) except *:
cdef bson_type_t value_t
cdef cstring key
cdef cstring full_key
cdef bson_iter_t child_iter
cdef uint64_t count = self.count
cdef _ArrayBuilderBase builder = None
cdef _ArrayBuilderBase parent_builder = None
while bson_iter_next(doc_iter):
# Get the key and and value.
key = bson_iter_key(doc_iter)
value_t = bson_iter_type(doc_iter)
# Get the appropriate full key.
if parent_type == BSON_TYPE_ARRAY:
full_key = base_key
full_key.append(b"[]")
self.parent_types[full_key] = BSON_TYPE_ARRAY
elif parent_type == BSON_TYPE_DOCUMENT:
full_key = base_key
full_key.append(b".")
full_key.append(key)
(<DocumentBuilder>self.builder_map[base_key]).add_field(key)
self.parent_types[full_key] = BSON_TYPE_DOCUMENT
self.parent_names[full_key] = base_key
else:
full_key = key
# Get the builder.
builder = <_ArrayBuilderBase>self.builder_map.get(full_key, None)
# If the inferred type was int32 but the same field has an int64 value,
# re-infer the field's type since int32 is a strict subset of int64.
# If builder already existed, avoid ditching previously appended values.
if not self.has_schema and builder is not None and builder.type_marker == BSON_TYPE_INT32 and value_t == BSON_TYPE_INT64:
old_array = builder.finish().cast('int64')
builder = self.get_builder(full_key, value_t, doc_iter, True)
builder.append_values(old_array.to_pylist())
elif not self.has_schema and builder is None:
builder = self.get_builder(full_key, value_t, doc_iter, True)
if builder is None:
continue
# Append nulls to catch up.
# For list children, the nulls are stored in the parent.
if parent_type != BSON_TYPE_ARRAY:
# For document children, catch up with the parent doc.
# Root fields will use the base document count
if parent_type == BSON_TYPE_DOCUMENT:
parent_builder = <_ArrayBuilderBase>self.builder_map.get(base_key, None)
count = parent_builder.length() - 1
if count > builder.length():
status = builder.append_nulls_raw(count - builder.length())
if not status.ok():
raise ValueError("Failed to append nulls to", full_key.decode('utf8'), ":", status.message().decode('utf8'))
# Append the next value.
if next_is_double_nan(doc_iter, value_t):
builder.append_null()
else:
status = builder.append_raw(doc_iter, value_t)
if not status.ok():
raise ValueError("Could not append raw value to", full_key.decode('utf8'), ":", status.message().decode('utf8'))
# Recurse into documents.
if value_t == BSON_TYPE_DOCUMENT and builder.type_marker == BSON_TYPE_DOCUMENT:
bson_iter_recurse(doc_iter, &child_iter)
self.parse_document(&child_iter, full_key, BSON_TYPE_DOCUMENT)
# Recurse into arrays.
if value_t == BSON_TYPE_ARRAY and builder.type_marker == BSON_TYPE_ARRAY:
bson_iter_recurse(doc_iter, &child_iter)
self.parse_document(&child_iter, full_key, BSON_TYPE_ARRAY)
# If we're a list element, increment the offset counter.
if parent_type == BSON_TYPE_ARRAY:
(<ListBuilder>self.builder_map[base_key]).append_count()
cpdef void process_bson_stream(self, const uint8_t* bson_stream, size_t length):
"""Process a bson byte stream."""
cdef bson_reader_t* stream_reader = bson_reader_new_from_data(bson_stream, length)
cdef const bson_t * doc = NULL
cdef bson_iter_t doc_iter
try:
while True:
doc = bson_reader_read_safe(stream_reader)
if doc == NULL:
break
if not bson_iter_init(&doc_iter, doc):
raise InvalidBSON("Could not read BSON document")
self.parse_document(&doc_iter, b"", 0)
self.count += 1
finally:
bson_reader_destroy(stream_reader)
cpdef finish(self):
"""Finish appending to the builders."""
cdef dict return_map = {}
cdef bytes key
cdef str field
cdef uint64_t count
cdef CStatus status
cdef _ArrayBuilderBase builder
cdef _ArrayBuilderBase parent_builder
# Move the builders to a new dict with string keys.
for key, builder in self.builder_map.items():
return_map[key.decode('utf-8')] = builder
# Insert null fields.
for field in list(return_map):
if return_map[field] is None:
return_map[field] = NullBuilder(memory_pool=self.pool)
# Pad fields as needed.
for field, builder in return_map.items():
# For list children, the nulls are stored in the parent.
key = field.encode('utf-8')
parent_type = self.parent_types.get(key, None)
# Check if the item was in our schema but never seen, and should have a parent.
if parent_type is None and "." in field:
parent_key, _, _ = field.rpartition('.')
self.parent_names[key] = parent_key.encode('utf-8')
parent_type = BSON_TYPE_DOCUMENT
# Add nulls according to parent type.
if parent_type == BSON_TYPE_ARRAY:
continue
if parent_type == BSON_TYPE_DOCUMENT:
parent_builder = self.builder_map[self.parent_names[key]]
count = parent_builder.length()
else:
count = self.count
if builder.length() < count:
status = builder.append_nulls_raw(count - builder.length())
if not status.ok():
raise ValueError("Failed to append nulls to", field, ":", status.message().decode("utf8"))
return return_map
cdef class _ArrayBuilderBase:
cdef:
public uint8_t type_marker
public bint allow_invalid
def append_values(self, values):
for value in values:
if value is None or value is np.nan:
self.append_null()
else:
self.append(value)
def append(self, value):
"""Interface to append a python value to the builder.
"""
cdef bson_reader_t* stream_reader = NULL
cdef const bson_t * doc = NULL
cdef bson_iter_t doc_iter
data = bson.encode(dict(data=value))
stream_reader = bson_reader_new_from_data(data, len(data))
doc = bson_reader_read_safe(stream_reader)
if doc == NULL:
raise ValueError("Could not append", value)
if not bson_iter_init(&doc_iter, doc):
raise InvalidBSON("Could not read BSON document")
while bson_iter_next(&doc_iter):
bson_iter_key(&doc_iter)
value_t = bson_iter_type(&doc_iter)
if next_is_double_nan(&doc_iter, value_t):
self.append_null()
else:
status = self.append_raw(&doc_iter, value_t)
if not status.ok():
raise ValueError("Could not append raw value of type", value_t, ":", status.message().decode("utf8"))
cdef CStatus append_raw(self, bson_iter_t * doc_iter, bson_type_t value_t):
pass
cdef shared_ptr[CArrayBuilder] get_builder(self):
pass
def __len__(self):
return self.length()
cpdef append_null(self):
cdef CStatus status = self.append_null_raw()
if not status.ok():
raise ValueError("Could not append null value:", status.message().decode("utf8"))
cpdef void append_nulls(self, uint64_t count):
for _ in range(count):
self.append_null()
cdef CStatus append_null_raw(self):
return self.get_builder().get().AppendNull()
cdef CStatus append_nulls_raw(self, uint64_t count):
cdef CStatus status
for _ in range(count):
status = self.append_null_raw()
if not status.ok():
return status
cpdef uint64_t length(self):
return self.get_builder().get().length()
def finish(self):
cdef shared_ptr[CArray] out
cdef CStatus status
cdef shared_ptr[CArrayBuilder] builder = self.get_builder()
with nogil:
status = builder.get().Finish(&out)
if not status.ok():
raise ValueError("Failed to convert value to array:", status.message().decode("utf8"))
return pyarrow_wrap_array(out)
cdef class StringBuilder(_ArrayBuilderBase):
cdef:
shared_ptr[CStringBuilder] builder
def __cinit__(self, MemoryPool memory_pool=None, bint allow_invalid=False):
cdef CMemoryPool* pool = maybe_unbox_memory_pool(memory_pool)
self.builder.reset(new CStringBuilder(pool))
self.type_marker = BSON_TYPE_UTF8
self.allow_invalid = allow_invalid
cdef CStatus append_raw(self, bson_iter_t * doc_iter, bson_type_t value_t):
cdef const char* value
cdef uint32_t str_len
if value_t == BSON_TYPE_UTF8:
value = bson_iter_utf8(doc_iter, &str_len)
return self.builder.get().Append(value, str_len)
if not self.allow_invalid and value_t != BSON_TYPE_NULL:
raise TypeError(f"Got unexpected type `{_bson_type_name(<uint8_t>value_t)}` instead of expected type `{_bson_type_name(self.type_marker)}`")
else:
return self.builder.get().AppendNull()
cdef shared_ptr[CArrayBuilder] get_builder(self):
return <shared_ptr[CArrayBuilder]>self.builder
cdef class CodeBuilder(StringBuilder):
def __cinit__(self, MemoryPool memory_pool=None, bint allow_invalid=False):
cdef CMemoryPool* pool = maybe_unbox_memory_pool(memory_pool)
self.builder.reset(new CStringBuilder(pool))
self.type_marker = BSON_TYPE_CODE
self.allow_invalid = allow_invalid
cdef CStatus append_raw(self, bson_iter_t * doc_iter, bson_type_t value_t):
cdef const char * bson_str
cdef uint32_t str_len
if value_t == BSON_TYPE_CODE:
bson_str = bson_iter_code(doc_iter, &str_len)
return self.builder.get().Append(bson_str, str_len)
if not self.allow_invalid and value_t != BSON_TYPE_NULL:
raise TypeError(f"Got unexpected type `{_bson_type_name(<uint8_t>value_t)}` instead of expected type `{_bson_type_name(self.type_marker)}`")
else:
return self.builder.get().AppendNull()
cdef shared_ptr[CArrayBuilder] get_builder(self):
return <shared_ptr[CArrayBuilder]>self.builder
def finish(self):
return super().finish().cast(CodeType())
cdef class ObjectIdBuilder(_ArrayBuilderBase):
cdef shared_ptr[CFixedSizeBinaryBuilder] builder
def __cinit__(self, MemoryPool memory_pool=None, bint allow_invalid=False):
cdef shared_ptr[CDataType] dtype = fixed_size_binary(12)
cdef CMemoryPool* pool = maybe_unbox_memory_pool(memory_pool)
self.builder.reset(new CFixedSizeBinaryBuilder(dtype, pool))
self.type_marker = BSON_TYPE_OID
self.allow_invalid = allow_invalid
cdef CStatus append_raw(self, bson_iter_t * doc_iter, bson_type_t value_t):
if value_t == BSON_TYPE_OID:
return self.builder.get().Append(bson_iter_oid(doc_iter).bytes)
if not self.allow_invalid and value_t != BSON_TYPE_NULL:
raise TypeError(f"Got unexpected type `{_bson_type_name(<uint8_t>value_t)}` instead of expected type `{_bson_type_name(self.type_marker)}`")
else:
return self.builder.get().AppendNull()
cdef shared_ptr[CArrayBuilder] get_builder(self):
return <shared_ptr[CArrayBuilder]>self.builder
def finish(self):
return super().finish().cast(ObjectIdType())
cdef class Int32Builder(_ArrayBuilderBase):
cdef shared_ptr[CInt32Builder] builder
def __cinit__(self, MemoryPool memory_pool=None, bint allow_invalid=False):
cdef CMemoryPool* pool = maybe_unbox_memory_pool(memory_pool)
self.builder.reset(new CInt32Builder(pool))
self.type_marker = BSON_TYPE_INT32
self.allow_invalid = allow_invalid
cdef CStatus append_raw(self, bson_iter_t * doc_iter, bson_type_t value_t) except *:
cdef double dvalue
cdef int64_t ivalue
if (value_t == BSON_TYPE_INT32 or value_t == BSON_TYPE_BOOL or value_t == BSON_TYPE_INT64):
# Check for overflow errors.
ivalue = bson_iter_as_int64(doc_iter)
if ivalue > INT_MAX or ivalue < INT_MIN:
raise OverflowError("Overflowed Int32 value")
return self.builder.get().Append(ivalue)
if value_t == BSON_TYPE_DOUBLE:
# Treat nan as null.
dvalue = bson_iter_as_double(doc_iter)
if isnan(dvalue):
return self.builder.get().AppendNull()
# Check for overflow errors.
ivalue = bson_iter_as_int64(doc_iter)
if ivalue > INT_MAX or ivalue < INT_MIN:
raise OverflowError("Overflowed Int32 value")
return self.builder.get().Append(ivalue)
if not self.allow_invalid and value_t != BSON_TYPE_NULL:
raise TypeError(f"Got unexpected type `{_bson_type_name(<uint8_t>value_t)}` instead of expected type `{_bson_type_name(self.type_marker)}`")
else:
return self.builder.get().AppendNull()
cdef shared_ptr[CArrayBuilder] get_builder(self):
return <shared_ptr[CArrayBuilder]>self.builder
cdef class Int64Builder(_ArrayBuilderBase):
cdef shared_ptr[CInt64Builder] builder
def __cinit__(self, MemoryPool memory_pool=None, bint allow_invalid=False):
cdef CMemoryPool* pool = maybe_unbox_memory_pool(memory_pool)
self.builder.reset(new CInt64Builder(pool))
self.type_marker = BSON_TYPE_INT64
self.allow_invalid = allow_invalid
cdef CStatus append_raw(self, bson_iter_t * doc_iter, bson_type_t value_t):
cdef double dvalue
if (value_t == BSON_TYPE_INT64 or
value_t == BSON_TYPE_BOOL or
value_t == BSON_TYPE_INT32):
return self.builder.get().Append(bson_iter_as_int64(doc_iter))
if value_t == BSON_TYPE_DOUBLE:
# Treat nan as null.
dvalue = bson_iter_as_double(doc_iter)
if isnan(dvalue):
return self.builder.get().AppendNull()
return self.builder.get().Append(bson_iter_as_int64(doc_iter))
if not self.allow_invalid and value_t != BSON_TYPE_NULL:
raise TypeError(f"Got unexpected type `{_bson_type_name(<uint8_t>value_t)}` instead of expected type `{_bson_type_name(self.type_marker)}`")
else:
return self.builder.get().AppendNull()
cdef shared_ptr[CArrayBuilder] get_builder(self):
return <shared_ptr[CArrayBuilder]>self.builder
cdef class DoubleBuilder(_ArrayBuilderBase):
cdef shared_ptr[CDoubleBuilder] builder
def __cinit__(self, MemoryPool memory_pool=None, bint allow_invalid=False):
cdef CMemoryPool* pool = maybe_unbox_memory_pool(memory_pool)
self.builder.reset(new CDoubleBuilder(pool))
self.type_marker = BSON_TYPE_DOUBLE
self.allow_invalid = allow_invalid
cdef CStatus append_raw(self, bson_iter_t * doc_iter, bson_type_t value_t):
if (value_t == BSON_TYPE_DOUBLE or
value_t == BSON_TYPE_BOOL or
value_t == BSON_TYPE_INT32 or
value_t == BSON_TYPE_INT64):
return self.builder.get().Append(bson_iter_as_double(doc_iter))
if not self.allow_invalid and value_t != BSON_TYPE_NULL:
raise TypeError(f"Got unexpected type `{_bson_type_name(<uint8_t>value_t)}` instead of expected type `{_bson_type_name(self.type_marker)}`")
else:
return self.builder.get().AppendNull()
cdef shared_ptr[CArrayBuilder] get_builder(self):
return <shared_ptr[CArrayBuilder]>self.builder
cdef class DatetimeBuilder(_ArrayBuilderBase):
cdef:
TimestampType dtype
shared_ptr[CTimestampBuilder] builder
def __cinit__(self, TimestampType dtype=timestamp('ms'),
MemoryPool memory_pool=None, bint allow_invalid=False):
cdef CMemoryPool* pool = maybe_unbox_memory_pool(memory_pool)
if dtype.unit != 'ms':
raise TypeError("PyMongoArrow only supports millisecond "
"temporal resolution compatible with MongoDB's "
"UTC datetime type.")
self.dtype = dtype
self.builder.reset(new CTimestampBuilder(
pyarrow_unwrap_data_type(self.dtype), pool))
self.type_marker = BSON_TYPE_DATE_TIME
self.allow_invalid = allow_invalid
@property
def unit(self):
return self.dtype
cdef CStatus append_raw(self, bson_iter_t * doc_iter, bson_type_t value_t):
if value_t == BSON_TYPE_DATE_TIME:
return self.builder.get().Append(bson_iter_date_time(doc_iter))
if not self.allow_invalid and value_t != BSON_TYPE_NULL:
raise TypeError(f"Got unexpected type `{_bson_type_name(<uint8_t>value_t)}` instead of expected type `{_bson_type_name(self.type_marker)}`")
else:
return self.builder.get().AppendNull()
cdef shared_ptr[CArrayBuilder] get_builder(self):
return <shared_ptr[CArrayBuilder]>self.builder
cdef class Date64Builder(_ArrayBuilderBase):
cdef:
DataType dtype
shared_ptr[CDate64Builder] builder
def __cinit__(self, MemoryPool memory_pool=None, bint allow_invalid=False):
cdef CMemoryPool* pool = maybe_unbox_memory_pool(memory_pool)
self.builder.reset(new CDate64Builder(pool))
self.type_marker = ARROW_TYPE_DATE64
self.allow_invalid = allow_invalid
cdef CStatus append_raw(self, bson_iter_t * doc_iter, bson_type_t value_t):
if value_t == BSON_TYPE_DATE_TIME:
return self.builder.get().Append(bson_iter_date_time(doc_iter))
if not self.allow_invalid and value_t != BSON_TYPE_NULL:
raise TypeError(f"Got unexpected type `{_bson_type_name(<uint8_t>value_t)}` instead of expected type `{_bson_type_name(<uint8_t>self.type_marker)}`")
else:
return self.builder.get().AppendNull()
@property
def unit(self):
return self.dtype
cdef shared_ptr[CArrayBuilder] get_builder(self):
return <shared_ptr[CArrayBuilder]>self.builder
cdef class Date32Builder(_ArrayBuilderBase):
cdef:
DataType dtype
shared_ptr[CDate32Builder] builder
def __cinit__(self, MemoryPool memory_pool=None, bint allow_invalid=False):
cdef CMemoryPool* pool = maybe_unbox_memory_pool(memory_pool)
self.builder.reset(new CDate32Builder(pool))
self.type_marker = ARROW_TYPE_DATE32
self.allow_invalid = allow_invalid
cdef CStatus append_raw(self, bson_iter_t * doc_iter, bson_type_t value_t):
cdef int64_t value
cdef int32_t seconds_val
if value_t == BSON_TYPE_DATE_TIME:
value = bson_iter_date_time(doc_iter)
# Convert from milliseconds to days (1000*60*60*24)
seconds_val = value // 86400000
return self.builder.get().Append(seconds_val)
if not self.allow_invalid and value_t != BSON_TYPE_NULL:
raise TypeError(f"Got unexpected type `{_bson_type_name(<uint8_t>value_t)}` instead of expected type `{_bson_type_name(<uint8_t>self.type_marker)}`")
else:
return self.builder.get().AppendNull()
@property
def unit(self):
return self.dtype
cdef shared_ptr[CArrayBuilder] get_builder(self):
return <shared_ptr[CArrayBuilder]>self.builder
cdef class NullBuilder(_ArrayBuilderBase):
cdef shared_ptr[CArrayBuilder] builder
def __cinit__(self, MemoryPool memory_pool=None):
cdef CMemoryPool* pool = maybe_unbox_memory_pool(memory_pool)
self.builder.reset(new CNullBuilder(pool))
self.type_marker = ARROW_TYPE_NULL
cdef CStatus append_raw(self, bson_iter_t * doc_iter, bson_type_t value_t):
return self.builder.get().AppendNull()
cdef shared_ptr[CArrayBuilder] get_builder(self):
return <shared_ptr[CArrayBuilder]>self.builder
cdef class BoolBuilder(_ArrayBuilderBase):
cdef shared_ptr[CBooleanBuilder] builder
def __cinit__(self, MemoryPool memory_pool=None, bint allow_invalid=False):
cdef CMemoryPool* pool = maybe_unbox_memory_pool(memory_pool)
self.builder.reset(new CBooleanBuilder(pool))
self.type_marker = BSON_TYPE_BOOL
self.allow_invalid = allow_invalid
cdef CStatus append_raw(self, bson_iter_t * doc_iter, bson_type_t value_t):
if value_t == BSON_TYPE_BOOL:
return self.builder.get().Append(bson_iter_bool(doc_iter))
if not self.allow_invalid and value_t != BSON_TYPE_NULL:
raise TypeError(f"Got unexpected type `{_bson_type_name(<uint8_t>value_t)}` instead of expected type `{_bson_type_name(self.type_marker)}`")
else:
return self.builder.get().AppendNull()
cdef shared_ptr[CArrayBuilder] get_builder(self):
return <shared_ptr[CArrayBuilder]>self.builder
cdef class Decimal128Builder(_ArrayBuilderBase):
cdef shared_ptr[CFixedSizeBinaryBuilder] builder
cdef uint8_t supported
def __cinit__(self, MemoryPool memory_pool=None, bint allow_invalid=False):
cdef shared_ptr[CDataType] dtype = fixed_size_binary(16)
cdef CMemoryPool* pool = maybe_unbox_memory_pool(memory_pool)
self.builder.reset(new CFixedSizeBinaryBuilder(dtype, pool))
self.type_marker = BSON_TYPE_DECIMAL128
if sys.byteorder == 'little':
self.supported = 1
else:
self.supported = 0
self.allow_invalid = allow_invalid
cdef CStatus append_raw(self, bson_iter_t * doc_iter, bson_type_t value_t):
cdef uint8_t dec128_buf[16]
cdef bson_decimal128_t dec128
if self.supported == 0:
# We do not support big-endian systems.
raise TypeError(f"Big-endian systems are not supported for `{_bson_type_name(self.type_marker)}`")
if value_t == BSON_TYPE_DECIMAL128:
bson_iter_decimal128(doc_iter, &dec128)
memcpy(dec128_buf, &dec128.low, 8);
memcpy(dec128_buf + 8, &dec128.high, 8)
return self.builder.get().Append(dec128_buf)
if not self.allow_invalid and value_t != BSON_TYPE_NULL:
raise TypeError(f"Got unexpected type `{_bson_type_name(<uint8_t>value_t)}` instead of expected type `{_bson_type_name(self.type_marker)}`")
else:
return self.builder.get().AppendNull()
cdef shared_ptr[CArrayBuilder] get_builder(self):
return <shared_ptr[CArrayBuilder]>self.builder
def finish(self):
return super().finish().cast(Decimal128Type_())
cdef class BinaryBuilder(_ArrayBuilderBase):
cdef:
uint8_t _subtype
shared_ptr[CStringBuilder] builder
def __cinit__(self, uint8_t subtype, MemoryPool memory_pool=None, bint allow_invalid=False):
cdef CMemoryPool* pool = maybe_unbox_memory_pool(memory_pool)
self._subtype = subtype
self.builder.reset(new CStringBuilder(pool))
self.type_marker = BSON_TYPE_BINARY
self.allow_invalid = allow_invalid
@property
def subtype(self):
return self._subtype
cdef CStatus append_raw(self, bson_iter_t * doc_iter, bson_type_t value_t):
cdef const char * val_buf
cdef uint32_t val_buf_len
cdef bson_subtype_t subtype
if value_t == BSON_TYPE_BINARY:
bson_iter_binary(doc_iter, &subtype, &val_buf_len, <const uint8_t **>&val_buf)
if subtype != self._subtype:
if not self.allow_invalid:
raise TypeError(
f"Got unexpected subtype `{subtype}` instead of expected subtype `{self._subtype}`")
else:
return self.builder.get().AppendNull()
return self.builder.get().Append(val_buf, val_buf_len)
if not self.allow_invalid and value_t != BSON_TYPE_NULL:
raise TypeError(f"Got unexpected type `{_bson_type_name(<uint8_t>value_t)}` instead of expected type `{_bson_type_name(self.type_marker)}`")
else:
return self.builder.get().AppendNull()
cdef shared_ptr[CArrayBuilder] get_builder(self):
return <shared_ptr[CArrayBuilder]>self.builder
def finish(self):
return super().finish().cast(BinaryType(self._subtype))
cdef class DocumentBuilder(_ArrayBuilderBase):
"""The document builder stores a map of field names that can be retrieved as a set."""
cdef:
dict field_map
int64_t count
def __cinit__(self):
self.type_marker = BSON_TYPE_DOCUMENT
self.field_map = dict()
cdef CStatus append_raw(self, bson_iter_t * doc_iter, bson_type_t value_t):
self.count += 1
return CStatus_OK()
cpdef uint64_t length(self):
return self.count
cdef CStatus append_null_raw(self):
self.count += 1
return CStatus_OK()
cpdef void add_field(self, cstring field_name):
self.field_map[field_name] = 1
def finish(self):
# Fields must be in order if we were given a schema.
return list(f.decode('utf-8') for f in self.field_map)
cdef class ListBuilder(_ArrayBuilderBase):
"""The list builder stores an int32 list of offsets and a counter with the current value."""
cdef:
int64_t count
shared_ptr[CInt32Builder] builder
def __cinit__(self, MemoryPool memory_pool=None):
cdef CMemoryPool* pool = maybe_unbox_memory_pool(memory_pool)
self.builder.reset(new CInt32Builder(pool))
self.count = 0
self.type_marker = BSON_TYPE_ARRAY
cdef CStatus append_raw(self, bson_iter_t * doc_iter, bson_type_t value_t):
if value_t == BSON_TYPE_NULL:
return self.append_null_raw()
return self.builder.get().Append(self.count)
cpdef void append_count(self):
self.count += 1
cdef CStatus append_null_raw(self):
return self.builder.get().AppendNull()
cdef shared_ptr[CArrayBuilder] get_builder(self):
return <shared_ptr[CArrayBuilder]>self.builder
def finish(self):
self.builder.get().Append(self.count)
return super().finish()